mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 47 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1203261 | 83 (1.180) | 11 (0.180) | 11/264 | 5.9 | 14.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 53 (0.850) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1203246 = | 82 (1.170) | 7 (0.110) | 7/264 | 7.6 | 9.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 54 (0.860) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 2721250 = | NA (NA) | 11 (0.160) | 7/284 | 8.2 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 223539 | 49 (0.700) | 11 (0.160) | 7/284 | 8.2 | 19.0% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 2812707 | 79 (1.130) | 6 (0.090) | 6/278 | 8.5 | 7.7% | intergenic (‑202/+33) | csrA/alaS | pleiotropic regulatory protein for carbon source metabolism/alanyl‑tRNA synthetase |
| ? | CP009273 | = 2812716 | 70 (1.060) | intergenic (‑211/+24) | csrA/alaS | pleiotropic regulatory protein for carbon source metabolism/alanyl‑tRNA synthetase | |||||
| * | ? | CP009273 | = 4161535 | 42 (0.600) | 14 (0.210) | 6/284 | 8.7 | 25.8% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | CP009273 | = 4202950 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | CP009273 | = 3940048 | 80 (1.140) | 14 (0.210) | 6/284 | 8.7 | 15.4% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4161529 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| * | ? | CP009273 | 2719559 = | NA (NA) | 14 (0.210) | 6/284 | 8.7 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2719583 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 225231 | 57 (0.810) | 14 (0.210) | 6/284 | 8.7 | 20.4% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2719583 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 1607524 = | 75 (1.070) | 5 (0.080) | 5/278 | 9.1 | 6.6% | intergenic (‑16/+48) | glsB/sad | glutaminase 2/succinate semialdehyde dehydrogenase, NAD(P)+‑dependent |
| ? | CP009273 | 1607546 = | 71 (1.080) | intergenic (‑38/+26) | glsB/sad | glutaminase 2/succinate semialdehyde dehydrogenase, NAD(P)+‑dependent | |||||