New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	42179 =	56 (0.910)	3 (0.050)	3/270	9.2	5.7%	intergenic (‑248/‑224)	caiT/fixA	putative transporter/anaerobic carnitine reduction putative electron transfer flavoprotein subunit
	?	CP009273	42275 =	48 (0.860)					intergenic (‑344/‑128)	caiT/fixA	putative transporter/anaerobic carnitine reduction putative electron transfer flavoprotein subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAATGGCTAACTCATAATGGGTATTCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGT  >  CP009273/42031‑42318                                                                                                                                                     |                                                                                                                                            tAATGGCTAACTCATAATGGGTATTCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGa                                                                                                                                             <  1:589702/149‑1 (MQ=255)       cTAACTCATAATGGGTATTCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCa                                                                                                                                       <  2:310415/149‑1 (MQ=255)           cTCATAATGGGTATTCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAatat                                                                                                                                   >  1:40409/1‑149 (MQ=255)             cATAATGGGTATTCAATAGGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTg                                                                                                                                 <  2:891700/149‑1 (MQ=255)             cATAATGGGTATTCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTg                                                                                                                                 <  1:851047/149‑1 (MQ=255)              aTAATGGGTATTCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTgg                                                                                                                                <  2:442179/149‑1 (MQ=255)                 aTGGGTATTCAATAAGCTGTATTCTGTGATTGGCATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTGAAAAATAACATCTGACTTTCAATATTGGTGa                                                                                                                             >  1:891924/1‑149 (MQ=255)                     gTATTCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCa                                                                                                                         >  1:396231/1‑149 (MQ=255)                     gTATTCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCa                                                                                                                         >  1:396240/1‑149 (MQ=255)                      tATTCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCAt                                                                                                                        >  1:613171/1‑149 (MQ=255)                        ttCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATaa                                                                                                                      >  2:229846/1‑149 (MQ=255)                          cAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGCTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTATAAAGAAAAAAAAAAATAACATCTGACTTTCAATATTGGTGATCCATaaaa                                                                                                                    <  2:610829/149‑1 (MQ=255)                                gCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAatat                                                                                                              <  1:625698/149‑1 (MQ=255)                                 cTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTATTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGGGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAGAGAATAtt                                                                                                             >  1:363670/1‑149 (MQ=255)                                            gATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCtt                                                                                                  >  2:166112/1‑149 (MQ=255)                                              ttGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCtttt                                                                                                <  1:103495/149‑1 (MQ=255)                                              ttGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCtttt                                                                                                <  1:992374/149‑1 (MQ=255)                                              ttGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCtttt                                                                                                <  1:677100/149‑1 (MQ=255)                                                      acaTTTTTGTTTCCGTTGACTAGAGGACGTATTATCGTTAATTTTTATTAATAATCAGTTTGTTATGCTCTGTTGTTGGTAAAAAATAACATCTAACTTTCAATATTGGTGATCAATGAACCAATATTCAAACTTGCTTCTTGCttctg                                                                                        >  2:233626/1‑145 (MQ=255)                                                       caTTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGcc                                                                                       >  1:31814/1‑149 (MQ=255)                                                             tGTTTCGGGTGAATAGAGGGCGTGTTTTCGTTGATTTTTATTAATACTCAGTTGGTTATTCTCAGTTGTGAGTACAAAATAACAGCTGGCTTTCAATCTTGGTGATCCATAAATAAATATTGAAAAGTTCTTTTTGCTATGCCCTGttt                                                                                 >  2:591705/1‑149 (MQ=255)                                                               tttCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTc                                                                               >  1:322922/1‑149 (MQ=255)                                                                  cGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAat                                                                            >  1:561983/1‑149 (MQ=255)                                                                    ggTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAACTAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAacat                                                                          >  1:721131/1‑149 (MQ=255)                                                                         aTAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTg                                                                     <  1:292624/149‑1 (MQ=255)                                                                             ggggCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATTTTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGa                                                                 <  2:76184/148‑1 (MQ=255)                                                                              gggCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGaa                                                                <  2:396231/149‑1 (MQ=255)                                                                              gggCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCAAAAAAAAAAAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGaa                                                                <  2:396240/149‑1 (MQ=255)                                                                                  gTTTTTTCGTTAATTTTGATTAATAATCAGATTGTTATGCTCTGTTTTGAGTAAAAAAAAACCTCTGACTTTCAATATTGGGGATCCGTAAAACAATATTTAAAATTTCTTTTTGCTACGCCTTGTTTTCAATATTGGTGAGGACCtca                                                            >  2:655876/1‑147 (MQ=255)                                                                                   ttttttCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTaa                                                           <  2:892290/149‑1 (MQ=255)                                                                                          gTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATAtt                                                    >  2:766014/1‑149 (MQ=255)                                                                                           ttAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTg                                                   >  2:480323/1‑149 (MQ=255)                                                                                                 ttGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGtt                                             >  1:322372/1‑149 (MQ=255)                                                                                                   gATTAATAATGAGTTTGTTATGGTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTgg                                           <  1:419680/149‑1 (MQ=255)                                                                                                    aTTAATAATCATTTTGTTATTCTCTGTTGAGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGa                                          <  2:891924/149‑1 (MQ=255)                                                                                                    aTTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAATAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGa                                          <  2:324955/149‑1 (MQ=255)                                                                                                      taataaTCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGAtt                                        >  2:888669/1‑149 (MQ=255)                                                                                                           atCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGAATTAtag                                   >  2:291894/1‑147 (MQ=255)                                                                                                                tttGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCgtg                              <  2:577017/149‑1 (MQ=255)                                                                                                                     tATGCTCTGTTGTGAGTAAAAAATAGCATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACa                         >  1:503667/1‑149 (MQ=255)                                                                                                                     tATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAGCAATATTGAAAGTTGGATTTATCTGCGTGTGACa                         >  1:91311/1‑149 (MQ=255)                                                                                                                      aTGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATTTGCGTGTGACAt                        >  2:948902/1‑149 (MQ=255)                                                                                                                         ctctGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTGTTTGCTACGCCGTGTTTTCAGTATTGGTGAGGACCTTAACAATATGGAAAGTTGGATTTTTATGCGTGTGACAtttt                     >  1:225269/1‑149 (MQ=255)                                                                                                                          tctGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAACATGGATTTATCTGCGTTGGACCtttgc                    >  2:34246/1‑147 (MQ=255)                                                                                                                             gttgtGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAat                 >  1:63229/1‑149 (MQ=255)                                                                                                                             gttgtGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAat                 >  1:63225/1‑149 (MQ=255)                                                                                                                                 ttaGTAAAAAATCACATTTGATTTTCAATATTGGTTATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTg             <  2:334864/147‑1 (MQ=255)                                                                                                                                 tgAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGCTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTg             <  2:287011/149‑1 (MQ=255)                                                                                                                                       aaaaaTAACATCTGACTTTCAATCTTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGAtt       >  2:633328/1‑149 (MQ=255)                                                                                                                                       aaaaaTAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGtttt                                                                                >  2:502512/1‑76 (MQ=255)                                                                                                                                       aaaaaTAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGtttt                                                                                >  2:502051/1‑76 (MQ=255)                                                                                                                                       aaaaaTAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGtttt                                                                                <  1:502512/76‑1 (MQ=255)                                                                                                                                       aaaaaTAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGtttt                                                                                <  1:502051/76‑1 (MQ=255)                                                                                                                                       aaaaaTAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTTTGACATGTTCAATATTGGTGAtt       >  1:166750/1‑149 (MQ=255)                                                                                                                                          aaTAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACGTTTTCAATATTGGTGATTaaa    >  1:108801/1‑149 (MQ=255)                                                                                                                                            tAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTCTTTTTTTGTGTTTTCAATATTGGTGAGAAACTTATCAATATTGGAAGTTGGATTTATCTGCGTGTGACATTTTCAATAACGGTGATTATAga  >  2:651621/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                            TAATGGCTAACTCATAATGGGTATTCAATAAGCTGTATTCTGTGATTGGTATCACATTTTTGTTTCGGGTGAATAGAGGGCGTTTTTTCGTTAATTTTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGT  >  CP009273/42031‑42318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.