New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	42179 =	56 (0.910)	3 (0.050)	3/270	9.2	5.7%	intergenic (‑248/‑224)	caiT/fixA	putative transporter/anaerobic carnitine reduction putative electron transfer flavoprotein subunit
	?	CP009273	42275 =	48 (0.860)					intergenic (‑344/‑128)	caiT/fixA	putative transporter/anaerobic carnitine reduction putative electron transfer flavoprotein subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATATGAACGACGTTTCCTTCATGATTTCTGGAGATGCAATGAAGATTATTACTTGCT  >  CP009273/42127‑42421                                                                                                                                                     |                                                                                                                                                   ttGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGtt                                                                                                                                                    >  1:322372/1‑149 (MQ=255)   gATTAATAATGAGTTTGTTATGGTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTgg                                                                                                                                                  <  1:419680/149‑1 (MQ=255)    aTTAATAATCATTTTGTTATTCTCTGTTGAGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGa                                                                                                                                                 <  2:891924/149‑1 (MQ=255)    aTTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAATAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGa                                                                                                                                                 <  2:324955/149‑1 (MQ=255)      taataaTCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGAtt                                                                                                                                               >  2:888669/1‑149 (MQ=255)           atCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGAATTAtag                                                                                                                                          >  2:291894/1‑147 (MQ=255)                tttGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCgtg                                                                                                                                     <  2:577017/149‑1 (MQ=255)                     tATGCTCTGTTGTGAGTAAAAAATAGCATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACa                                                                                                                                >  1:503667/1‑149 (MQ=255)                     tATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAGCAATATTGAAAGTTGGATTTATCTGCGTGTGACa                                                                                                                                >  1:91311/1‑149 (MQ=255)                      aTGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATTTGCGTGTGACAt                                                                                                                               >  2:948902/1‑149 (MQ=255)                         ctctGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTGTTTGCTACGCCGTGTTTTCAGTATTGGTGAGGACCTTAACAATATGGAAAGTTGGATTTTTATGCGTGTGACAtttt                                                                                                                            >  1:225269/1‑149 (MQ=255)                          tctGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAACATGGATTTATCTGCGTTGGACCtttgc                                                                                                                           >  2:34246/1‑147 (MQ=255)                             gttgtGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAat                                                                                                                        >  1:63229/1‑149 (MQ=255)                             gttgtGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAat                                                                                                                        >  1:63225/1‑149 (MQ=255)                                 ttaGTAAAAAATCACATTTGATTTTCAATATTGGTTATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTg                                                                                                                    <  2:334864/147‑1 (MQ=255)                                 tgAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGCTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTg                                                                                                                    <  2:287011/149‑1 (MQ=255)                                       aaaaaTAACATCTGACTTTCAATCTTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGAtt                                                                                                              >  2:633328/1‑149 (MQ=255)                                       aaaaaTAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTTTGACATGTTCAATATTGGTGAtt                                                                                                              >  1:166750/1‑149 (MQ=255)                                          aaTAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACGTTTTCAATATTGGTGATTaaa                                                                                                           >  1:108801/1‑149 (MQ=255)                                            tAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTCTTTTTTTGTGTTTTCAATATTGGTGAGAAACTTATCAATATTGGAAGTTGGATTTATCTGCGTGTGACATTTTCAATAACGGTGATTATAga                                                                                                         >  2:651621/1‑148 (MQ=255)                                                        ttCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCaaaa                                                                                             >  1:445067/1‑149 (MQ=255)                                                               ttGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAgg                                                                                      <  1:166112/149‑1 (MQ=255)                                                                  gTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCg                                                                                   <  2:561983/149‑1 (MQ=255)                                                                   tgctCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGcat                                                                                  <  2:718108/146‑3 (MQ=255)                                                                     aTCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGa                                                                                >  1:43245/1‑149 (MQ=255)                                                                     aTCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTCGTGATTAAAGTTTTATTTAAAAATTAAAGGGCGTGa                                                                                >  1:130571/1‑149 (MQ=255)                                                                          tAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCt                                                                           <  2:322372/149‑1 (MQ=255)                                                                          tAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCt                                                                           <  1:593496/149‑1 (MQ=255)                                                                                aaTATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGTGCGTGATATCTGTAGtt                                                                     >  1:351378/1‑149 (MQ=255)                                                                                  tatTGAAAATTTCTTTTTGCTCCGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTTACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTaa                                                                   <  1:165314/149‑1 (MQ=255)                                                                                    ttGAAAATTTCTTTTGGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAaca                                                                 >  2:559082/1‑149 (MQ=255)                                                                                       aaaaTTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAAcacca                                                              >  1:16715/1‑149 (MQ=255)                                                                                       aaaaTTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAAcacca                                                              >  1:535972/1‑149 (MQ=255)                                                                                                  ttGCTACGCCGTGTTTTCAATAGTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGCGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATATGacc                                                   <  2:7040/149‑3 (MQ=255)                                                                                                       aCGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATTTGAACGACGt                                              >  1:543465/1‑149 (MQ=255)                                                                                                         gCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATATGAACGACGttt                                            >  1:268545/1‑149 (MQ=255)                                                                                                               ttttCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATATGAACGACGTTTCCTTCa                                      <  1:60577/149‑1 (MQ=255)                                                                                                                 ttCAATATTGGTGAGGAATTTAACAAGATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACCCCACCGATATGAACGACGTTTCCTTCATg                                    <  2:613171/149‑1 (MQ=255)                                                                                                                      tatTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATATGAACGACGTTTCCTTCATGATTTc                               >  2:996487/1‑149 (MQ=255)                                                                                                                       atTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATATAAACGACGTTTCCTCCATGAttccc                              >  2:984480/1‑146 (MQ=255)                                                                                                                        ttGGTGAGGAACTTAACAAGATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATATGAACGACGTTTCCTTCATGATTTCTg                             <  2:43245/149‑1 (MQ=255)                                                                                                                           gTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCAATATGAACGACGTTTCCTTCATGATTTCTGgag                          >  2:145710/1‑149 (MQ=255)                                                                                                                              aGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATATGAACGACGTTTCCTTCATGATTTCTGGAGATg                       >  1:626281/1‑149 (MQ=255)                                                                                                                                 aaCTTAATAATATAGAAAGGTGGATTTATCTGGCTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTCATATATGTAATTAACACCACCGATATGAACGACGTTTCCTTCATGATTTCTGGAGATGCaa                    <  2:363670/149‑1 (MQ=255)                                                                                                                                  aCTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATATGAACGACGTTTCCTTCATGATTTCTGGAGATGCAAt                   <  1:888669/149‑1 (MQ=255)                                                                                                                                   cTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATATGAACGACGTTTCCTTCATGATTTCTGGAGATGCAATg                  >  2:454071/1‑149 (MQ=255)                                                                                                                                   cTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATATGAACGACGTTTCCTTCATGATTTCTGGAGATGCAATg                  <  1:480323/149‑1 (MQ=255)                                                                                                                                      aaCAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATATGAACGACGTTTCCTTCATGATTTCTGGAGATGCAATGAAg               <  2:40409/149‑1 (MQ=255)                                                                                                                                             tttaaaGTTGGCTTCATCTGTCTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCAACGATATGGACGACGTTTCCTTCATGATTTCTGGAGATGCAATGAAGAttatta        <  2:539088/146‑1 (MQ=255)                                                                                                                                                   gTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATATGAACGACGTTTCCTTCATGATTTCTGGAAATGCAATAAAGATTATTACTTGCt  >  2:773623/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TTGATTAATAATCAGTTTGTTATGCTCTGTTGTGAGTAAAAAATAACATCTGACTTTCAATATTGGTGATCCATAAAACAATATTGAAAATTTCTTTTTGCTACGCCGTGTTTTCAATATTGGTGAGGAACTTAACAATATTGAAAGTTGGATTTATCTGCGTGTGACATTTTCAATATTGGTGATTAAAGTTTTATTTCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATATGAACGACGTTTCCTTCATGATTTCTGGAGATGCAATGAAGATTATTACTTGCT  >  CP009273/42127‑42421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.