| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2508438 = | 157 (1.220) | 9 (0.080) | 7/232 | NT | 6.4% | intergenic (+670/+81) | sarZ/narK | transcriptional regulator/MFS family major facilitator transporter, nitrate:nitrite antiporter |
| ? | CP000730 | 2508486 = | 119 (1.010) | intergenic (+718/+33) | sarZ/narK | transcriptional regulator/MFS family major facilitator transporter, nitrate:nitrite antiporter | |||||
TGGATGTATTGCATTATTTACCATGCGTCATTTATACCAAAAAGAATATGGCTCATTGAAAAACGGTTGATATGTAATACATGCCATTCATTTAGTTAAATACAAAGCCTTAATATCATGCGCAATATTCGTAGCATGACATTAAGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2508588‑2508438‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attaaggctttGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTAAATGACTTGATC > CP000730/2508486‑2508625 TGGATGTATTGCATTATTTACCATGCGTCATTTATACCAAAAAGAATATGGCTCATTGAAAAACGGTTGATATGTAATACATGCCATTCATTTAGTTAAATACAAAGCCTTAATATCATGCGCAATATTCGTAGCATGACA < 2:992925/141‑1 GGATGTATTGCATTATTTACCATGCGTCATTTATACCAAAAAGAATATGGCTCATTGAAAAACGGTTGATATGTAATACATGCCATTCATTTAGTTAAATACAAAGCCTTAATATCATGCGCAATATTCGTAGCATGACAT < 1:533128/141‑1 GATGTATTGCATTATTTACCATGCGTCATTTATACCAAAAAGAATATGGCTCATTGAAAAACGGTTGATATGTAATACATGCCATTCATTTAGTTAAATACAAAGCCTTAATATCATGCGCAATATTCGTAGCATGACATT > 1:1156142/1‑141 TGTATTGCATTATTTACCATGCGTCATTTATACCAAAAAGAATATGGCTCATTGAAAAACGGTTGATATGTAATACATGCCATTCATTTAGTTAAATACAAAGCCTTAATATCATGCGCAATATTCGTAGCATGACATTAA > 2:1218012/1‑141 GTATTGCATTATTTACCATGCGTCATTTATACCAAAAAGAATATGGCTCATTGAAAAACGGTTGATACGTAATACATGCCATTCATTTAGTTAAATACAAAGCCTTAATATCATGCGCAATATTCGTAGCATGACATTAAG > 1:827127/1‑141 ATTGCATTATTTACCATGCGTCATTTATACCAAAAAGAATATGGCTCATTGAAAAACGGTTGATATGTAATACATGCCATTCATTTAGTTAAATACAAAGCCTTAATATCATGCGCAATATTCGTAGCATGACATTAAGGC > 1:1102567/1‑141 ATTGCATTATTTACCATGCGTCATTTATACCAAAAAGAATATGGCTCATTGAAAAACGGTTGATATGTAATACATGCCATTCATTTAGTTAAATACAAAGCCTTAATATCATGCGCAATATTCGTAGCATGACATTAAGGC < 2:321757/141‑1 TTGCATTATTTACCATGCGTCATTTATACCAAAAAGAATATGGCTCATTGAAAAACGGTTGATATGTAATACATGCCATTCATTTAGTTAAATACAAAGCCTTAATATCATGCGCAATGTTCGTAGCATGACATTAAGGCT > 2:353234/1‑141 GCATTATTTACCATGCGTCATTTATACCAAAAAGAATATGGCTCATTGAAAAACGGTTGATATGTAATACATGCCATTCATTTAGTTAAATACAAAGCCTTAATATCATGCGCAATATTCGTAGCATGACATTAAGGCTTT < 1:1218012/141‑1 TATGGCTCATTGAAAAACGGTTGATATGTAATACATGCCATTCATTTAGTTAAATACAAAGCCTTAATATCATGCGCAATATTCGTAGCATGACA > 2:1333/1‑95 TATGGCTCATTGAAAAACGGTTGATATGTAATACATGCCATTCATTTAGTTAAATACAAAGCCTTAATATCATGCGCAATATTCGTAGCATGACA < 1:1333/95‑1 CAAAGCCTTAATATCATGCGCAATATTCGTAGCATGACATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATG > 1:1657285/1‑141 CAAAGCCTTAATATCATGCGCAATATTCGTAGCATGACATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATG > 2:1564831/1‑141 GCCTTAATATCATGCGCAATATTCGTAGCATGACATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAAT > 1:1414759/1‑141 CCTTAATATCATGCGCAATATTCGTAGCATGACATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATA > 1:161329/1‑141 AATATCATGCGCAATATTCGTAGCATGACATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATC > 1:1582200/1‑141 AATATCATGCGCAATATTCGTAGCATGACATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCG > 2:1240802/1‑80 AATATCATGCGCAATATTCGTAGCATGACATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCG < 1:1240802/80‑1 ATATCATGCGCAATATTCGTAGCATGACATTAAGGCTTTGTACTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCC < 2:1582200/141‑1 TCATGCGCAATATTCGTAGCATGACATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAA > 1:511829/1‑141 atcTTAATGCTTTGTATATAACTAAACGAATGTCACGTATTCTCTATCAACCGTTTTTCAATGATCCATATTCTTTTTGGTATAAATGACGCAGGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTA < 1:1306627/138‑1 ATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTAAA > 2:110645/1‑141 TTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTAAAT < 1:272443/141‑1 AAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTAAATGA < 2:1017448/141‑1 AGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTAAATGAC > 2:1492667/1‑141 GCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTAAATGACTT < 2:828362/141‑1 GCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTAAATGACTT < 2:828368/141‑1 GCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTAAATGACTT < 2:828762/141‑1 TGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTAAATGACTTGATC < 1:690191/141‑1 TGGATGTATTGCATTATTTACCATGCGTCATTTATACCAAAAAGAATATGGCTCATTGAAAAACGGTTGATATGTAATACATGCCATTCATTTAGTTAAATACAAAGCCTTAATATCATGCGCAATATTCGTAGCATGACATTAAGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2508588‑2508438‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attaaggctttGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTAAATGACTTGATC > CP000730/2508486‑2508625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |