| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 739788 = | 60 (0.850) | 6 (0.090) | 4/244 | 9.8 | 10.4% | intergenic (+15/+573) | pitA/sle1 | possible PiT family inorganic phosphate transporter/possible LysM domain protein |
| ? | CP000730 | 739837 = | 49 (0.770) | intergenic (+64/+524) | pitA/sle1 | possible PiT family inorganic phosphate transporter/possible LysM domain protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATGTTCCATGGAATACATTTATAATATAGCCTCCTAATTAAAATGCTTTGTCTTGGTCATTCTACGTAAATTCTATAAAATATGTTATCTACTTACATAAAAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/739938‑739788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaagttcagtttTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGTAAGAGCA > CP000730/739837‑739971 TATGTTCCATGGAATACATTTATAATATAGCCTCCTAATTAAAATGCTTTGTCTTGGTCATTCTACGTAAATTCTATAAAATATGTTATCTACTTACATAAAAAACTGAACTTCAATACCACCATATGTTTGTGATACTGA < 2:532910/141‑1 TGTTCCATGGAATACATTTATAATATAGCCTCCTAATTAAAATGCTTTGTCTTGGTCATTCTACGTAAATTCTATAAAATATGTTATCTACTTACATAAAAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAG > 2:578524/1‑141 TGTTCCATGGAATACATTTATAATATAGCCTCCTAATTAAAATGCTTTGTCTTGGTCATTCTACGTAAATTCTATAAAATATGTTATCTACTTACATAAAAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAG < 2:351292/141‑1 TCCATGGAATACATTTATAATATAGCCTCCTAATTAAAATGCTTTGTCTTGGTCATTCTACGTAAATTCTATAAAATATGTTATCTACTTACATAAAAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTC > 2:652429/1‑141 ATGGAATACATTTATAATATAGCCTCCTAATTAAAATGCTTTGTCTTGGTCATTCTACGTAAATTCTATAAAATATGTTATCTACTTACATAAAAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGT < 2:704822/141‑1 ATGGAATACATTTATAATATAGCCTCCTAATTAAAATGCTTTGTCTTGGTCATTCTACGTAAATTCTATAAAATATGTTATCTACTTACATAAAAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGT > 2:179974/1‑141 ATGGAATACATTTATAATAAAGCCTACTAATTAAAATGCTTTGTCTTGGTCATTCTACGTAAATTCTATAAAATATGTTATCTACTTACATAAAAAACTGAACTTCAATACCACCATATGCTTGTGATACTGAAGTTCAGT > 2:427489/1‑141 TCTACGTAAATTCTATAAAATATGTTATCTACTTACATAAAAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGA > 1:505163/1‑141 tggtttgtgtatcaATAAAAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGC < 2:492796/127‑1 TGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGG > 2:61456/1‑141 GAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGA > 2:183187/1‑141 GAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGA > 2:749424/1‑141 CAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAA < 2:505163/141‑1 AGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCA > 2:773804/1‑68 AGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCA < 1:773804/68‑1 TTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGTAAGAG > 1:446735/1‑141 TCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGTAAGAGC < 2:466640/141‑1 CAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGTAAGAGCA < 1:815208/141‑1 CAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGTAAGAGCA < 2:817184/141‑1 TATGTTCCATGGAATACATTTATAATATAGCCTCCTAATTAAAATGCTTTGTCTTGGTCATTCTACGTAAATTCTATAAAATATGTTATCTACTTACATAAAAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/739938‑739788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaagttcagtttTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGTAAGAGCA > CP000730/739837‑739971 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |