New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	739788 =	60 (0.850)	6 (0.090)	4/244	9.8	10.4%	intergenic (+15/+573)	pitA/sle1	possible PiT family inorganic phosphate transporter/possible LysM domain protein
	?	CP000730	739837 =	49 (0.770)					intergenic (+64/+524)	pitA/sle1	possible PiT family inorganic phosphate transporter/possible LysM domain protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGTAAGAGCA  >  CP000730/739701‑739971                                                                                                                                         |                                                                                                                                       aTGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTAt                                                                                                                                    >  2:19271/1‑141 (MQ=255)         ttacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAg                                                                                                                            >  1:205172/1‑141 (MQ=255)            cattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATa                                                                                                                         <  1:189028/141‑1 (MQ=255)               tacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACa                                                                                                                      <  1:138047/141‑1 (MQ=255)               tacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACa                                                                                                                      <  1:277561/141‑1 (MQ=255)                  cTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACatat                                                                                                                   >  1:410491/1‑141 (MQ=255)                     tttCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATAtttt                                                                                                                >  1:652429/1‑141 (MQ=255)                       tCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTtat                                                                                                              >  2:354008/1‑141 (MQ=255)                       tCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTtat                                                                                                              <  2:404418/141‑1 (MQ=255)                           cATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGaa                                                                                                          >  2:83000/1‑141 (MQ=255)                           cATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATACGGTTGTATTGAAGTTCAATTTTTTATGTAAGTAGATAACATACTTTATAGaa                                                                                                          >  1:578524/1‑141 (MQ=255)                            aTTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAAt                                                                                                         <  1:400808/141‑1 (MQ=255)                            aTTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAAt                                                                                                         >  1:204323/1‑141 (MQ=255)                             ttGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAAtt                                                                                                        <  2:490860/141‑1 (MQ=255)                              tGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTAAGTTTTTTATGTAAGTAGATAACATATTTTATAGAAttt                                                                                                       >  2:699993/1‑141 (MQ=255)                                  aGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGt                                                                                                   >  1:778177/1‑141 (MQ=255)                                   gCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTa                                                                                                  >  2:90249/1‑141 (MQ=255)                                      ggTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGaa                                                                                               <  1:328668/141‑1 (MQ=255)                                                   atataCTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACaaa                                                                                  >  2:657362/1‑141 (MQ=255)                                                        cttaacttaTTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCAtt                                                                             >  1:718990/1‑141 (MQ=255)                                                         ttaacttaTTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCAttt                                                                            <  2:346283/141‑1 (MQ=255)                                                           aacttaTTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTa                                                                          <  1:482929/141‑1 (MQ=255)                                                              ttaTTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAAtt                                                                       <  1:186206/141‑1 (MQ=255)                                                                 tttttCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTagg                                                                    >  2:761734/1‑141 (MQ=255)                                                                    ttCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTaggagg                                                                 >  2:517609/1‑141 (MQ=255)                                                                     tCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGc                                                                >  2:815208/1‑141 (MQ=255)                                                                     tCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGc                                                                <  2:532029/141‑1 (MQ=255)                                                                        aaTTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATAttt                                                                                                                 <  1:666683/89‑1 (MQ=255)                                                                        aaTTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATAttt                                                                                                                 >  2:666683/1‑89 (MQ=255)                                                                        aaTTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCtat                                                             <  2:710797/141‑1 (MQ=255)                                                                             aaaaTAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTAtattat                                                        >  2:450323/1‑141 (MQ=255)                                                                               aaTAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATaa                                                      >  1:708447/1‑141 (MQ=255)                                                                               aaTAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATaa                                                      <  1:450323/141‑1 (MQ=255)                                                                                aTAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGAc                                                                                           <  1:181219/103‑1 (MQ=255)                                                                                aTAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGAc                                                                                           >  2:181219/1‑103 (MQ=255)                                                                                          actGAACTTCAGTATCACAAGCATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGTAGGCTTTATTATAAATGTATTCCAt                                           <  2:427489/141‑1 (MQ=255)                                                                                          actGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCAt                                           >  2:704822/1‑141 (MQ=255)                                                                                          actGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCAt                                           <  2:179974/141‑1 (MQ=255)                                                                                             gAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGa                                        <  2:652429/141‑1 (MQ=255)                                                                                                cTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACa                                     >  2:351292/1‑141 (MQ=255)                                                                                                cTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACa                                     <  2:578524/141‑1 (MQ=255)                                                                                                  tCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATa                                   >  2:532910/1‑141 (MQ=255)                                                                                                            aaaCATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAgg                         >  2:12352/1‑141 (MQ=255)                                                                                                             aaCATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGt                        <  2:57848/141‑1 (MQ=255)                                                                                                               cATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCa                      <  1:273701/141‑1 (MQ=255)                                                                                                               aatatGGTGGTATTGAAGTTCAGTTTCTTATGTAAGTAGATAACATATTTTATAGAATTTAAGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATTGAACATAATCAGTTAGGTCa                      <  2:49179/140‑1 (MQ=255)                                                                                                                   tggtggTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAACTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTaa                  >  2:319996/1‑141 (MQ=255)                                                                                                                        gtATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAatat             <  2:456965/141‑1 (MQ=255)                                                                                                                         tATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAatata            >  2:643294/1‑141 (MQ=255)                                                                                                                               aGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCa                                                                               >  2:773804/1‑68 (MQ=255)                                                                                                                               aGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCa                                                                               <  1:773804/68‑1 (MQ=255)                                                                                                                                 ttCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGTAagag    >  1:446735/1‑141 (MQ=255)                                                                                                                                  tCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGTAAGAGc   <  2:466640/141‑1 (MQ=255)                                                                                                                                   cAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGTAAGAGCa  <  1:815208/141‑1 (MQ=255)                                                                                                                                   cAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGTAAGAGCa  <  2:817184/141‑1 (MQ=255)                                                                                                                                         |                                                                                                                                       ATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGTAAGAGCA  >  CP000730/739701‑739971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.