| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2252589 = | 88 (1.250) | 9 (0.140) | 7/252 | 8.3 | 9.8% | intergenic (+25/+127) | luxS/USA300HOU_2124 | S‑ribosylhomocysteine lyase/hypothetical membrane protein |
| ? | CP000730 | 2252638 = | 84 (1.270) | intergenic (+74/+78) | luxS/USA300HOU_2124 | S‑ribosylhomocysteine lyase/hypothetical membrane protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2252736‑2252589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGT > CP000730/2252638‑2252773 GGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTTTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGAC > 2:691664/1‑141GGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGAC < 2:282382/141‑1 CTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGC < 1:615154/141‑1 CTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGC < 1:445986/141‑1 GTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGAC > 1:114981/1‑121 GTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGAC < 2:114981/121‑1 TAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTT > 1:749956/1‑141 AAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAATGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAAT > 2:671075/1‑141 AAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAA < 1:14285/123‑1 AAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAA > 2:14285/1‑123 GTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCC > 1:399426/1‑141 GTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCC > 1:399255/1‑141 GGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCAT > 1:236483/1‑141 CAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTGTAATTTCTTAATTAGTCCCATTAA > 1:517916/1‑141 TGTAAAATCATTGTTCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGC < 2:161337/141‑1 ACTGCTTTTTTTTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCTTTAACACGAACTGCATAGGTAACCTTAAATA > 2:507548/1‑141 CTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATAT > 2:562836/1‑141 CTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGT > 2:191389/1‑141 GGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2252736‑2252589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGT > CP000730/2252638‑2252773 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |