New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 690094	27 (0.890)	3 (0.110)	3/252	4.4	10.1%	intergenic (‑23/+12)	USA300HOU_0631/USA300HOU_0632	hypothetical membrane protein/hypothetical membrane protein
	?	CP000730	= 690115	28 (0.980)					coding (375/384 nt)	USA300HOU_0632	hypothetical membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCTTTTGCATCATAATTTGCTGTTGATATAGACTCAGAACGAACACGATAATACGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/689946‑690094 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaataacATTTAAATAGCCCCTATTGGGGTTATTTTTATTGGAGGGATGACATGAATTTAAAAGCACCGTATGCAGGTTTAAGAGATAATTTGTTATTAACGAAAACTGGCGAAGTTTGGGCGTATTATCGTGTTCGTTCTGAGTCT  <  CP000730/690115‑689976                                                                                                                                                                                                                                                                                                   TTCTTTTGCATCATAATTTGCTGTTGATATAGACTCAGAACGAACACGATAATACGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATA                                                                                                                                                      <  2:217305/141‑1      TTGCATCATAATTTGCTGTTGATATAGACTCAGAACGAACACGATAATACGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAAT                                                                                                                                                 >  1:279320/1‑141                                           AACACGATAATACGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCGCCAATAAAAATAACATTTAAATAGCCCCTATTGGGGTTATTTTTATTG                                                                                                            <  2:327675/141‑1                                            ACACGATAATACGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACATTTAAATAGCCCCTATTGGGGTTATTT                                                                                                                  <  1:243675/134‑1                                            ACACGATAATACGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACATTTAAATAGCCCCTATTGGGGTTATTT                                                                                                                  >  2:243675/1‑134                                                                                                                                                     CATTTAAATAGCCCCTATTGGGGTTATTTTTATTGGAGGGATGACATGAATTTAAAAGCACCGTATGCAGGTTTAAGAGATAATTTGTTATTAACGAAAACTGGCGAAGTTTGGGCGTATTATCGTGTTCGTTCTGAGTCT  <  1:80371/141‑1                                                                                                                                                                                                                                                                                                   TTCTTTTGCATCATAATTTGCTGTTGATATAGACTCAGAACGAACACGATAATACGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/689946‑690094 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaataacATTTAAATAGCCCCTATTGGGGTTATTTTTATTGGAGGGATGACATGAATTTAAAAGCACCGTATGCAGGTTTAAGAGATAATTTGTTATTAACGAAAACTGGCGAAGTTTGGGCGTATTATCGTGTTCGTTCTGAGTCT  <  CP000730/690115‑689976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.