New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 690094	27 (0.890)	3 (0.110)	3/252	4.4	10.1%	intergenic (‑23/+12)	USA300HOU_0631/USA300HOU_0632	hypothetical membrane protein/hypothetical membrane protein
	?	CP000730	= 690115	28 (0.980)					coding (375/384 nt)	USA300HOU_0632	hypothetical membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGACTCAGAACGAACACGATAATACGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATAAGAAGAAAAATAATTTCTTTCCATCTTGTTTTAACTTAACAATAT  >  CP000730/689976‑690254                                                                                                                                            |                                                                                                                                            aGACTCAGAACGAACACGATAATACGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATg                                                                                                                                            >  1:80371/1‑141 (MQ=255)                      ataCGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATTATAtt                                                                                                                       >  2:260920/1‑141 (MQ=255)                       taCGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTc                                                                                                                      <  2:192237/141‑1 (MQ=255)                       taCGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTc                                                                                                                      <  2:17145/141‑1 (MQ=255)                              aaaCTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTActtct                                                                                                               <  2:232514/141‑1 (MQ=255)                                      ccAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATa                                                                                                       >  1:234529/1‑141 (MQ=255)                                        aGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAAc                                                                                                     <  2:211862/141‑1 (MQ=255)                                                         aaTTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCtt                                                                                    <  1:280721/141‑1 (MQ=255)                                                             aTCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACt                                                                                >  1:103979/1‑141 (MQ=255)                                                              tctcTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCGAATAGGGGCGATTAAAAGGGGAGTTGATTATCATGATATTCTACTTCTTCATCATAACGTAATTTAACTGTTCTTAACTg                                                                               >  1:90135/1‑141 (MQ=255)                                                               ctctTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGc                                                                              <  1:137838/141‑1 (MQ=255)                                                                 ctTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGcac                                                                            >  1:151357/1‑141 (MQ=255)                                                                          gCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAAc                                                                   <  1:363230/141‑1 (MQ=255)                                                                                           aTTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATccc                                                  <  1:313236/141‑1 (MQ=255)                                                                                             tCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCAt                                                >  1:194789/1‑141 (MQ=255)                                                                                               aTGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATaa                                              >  1:37484/1‑141 (MQ=255)                                                                                                  tCATCCCTCCAATAAAAATAACCCCAATAGGTGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATaagaa                                           <  1:205183/141‑1 (MQ=255)                                                                                                   cgtgccTGCAATGAATATAAACCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTGATTATAATGTTGTTTAATTTTTCTTAACTGCACATTATATACCATTATTACATAATCCCTTaagtag                                          <  2:256206/137‑1 (MQ=255)                                                                                                         accAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTCCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATAAGAAGAAAaat                                    <  2:288391/140‑1 (MQ=255)                                                                                                          ccAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATAAGAAGAAAaata                                   >  2:48596/1‑141 (MQ=255)                                                                                                             aTAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTc                                                                                      <  1:114389/87‑1 (MQ=255)                                                                                                             aTAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTc                                                                                      >  2:114389/1‑87 (MQ=255)                                                                                                                   aTAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATAAGAAGAAAAATAAtttctttc                          >  2:252918/1‑141 (MQ=255)                                                                                                                           aaTAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATAAGAAGAAAAATAATTTCTTTCCATCTTGt                  <  1:261860/141‑1 (MQ=255)                                                                                                                             tAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATAAGAAGAAAAATAATTTCTTTCAATCTTGttt                >  1:276972/1‑141 (MQ=255)                                                                                                                                         aaaTGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCAATAAAAAAAAAAATAATTTCTTTCCATCTTGTTTTAACTTAACAat    <  2:61688/141‑1 (MQ=255)                                                                                                                                         aaaTGTTATTTTTTTATCATGATATTCTACTTCGTCAACATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCACAAAAAAAAAAAAATAATTTCTTTCCATCTTGTTTTAACTTAACAat    <  2:80371/141‑1 (MQ=255)                                                                                                                                          aaTGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATAAGAAGAAAAATAATTTCTTTCCATCTTGTTTTAACTTAACAata   >  2:189125/1‑141 (MQ=255)                                                                                                                                           aTGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATAAGAAGAAAAATAATTTCTTTCCATCTTGTTTTAACTTAACAatat  >  1:187925/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                            AGACTCAGAACGAACACGATAATACGCCCAAACTTCGCCAGTTTTCGTTAATAACAAATTATCTCTTAAACCTGCATACGGTGCTTTTAAATTCATGTCATCCCTCCAATAAAAATAACCCCAATAGGGGCTATTTAAATGTTATTTTTTTATCATGATATTCTACTTCTTCATCATAACTTAATTTAACTTTTCTTAACTGCACATTAAAAACAAATATTACAAAATCCCATAAGAAGAAAAATAATTTCTTTCCATCTTGTTTTAACTTAACAATAT  >  CP000730/689976‑690254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.