| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 715303 = | 129 (1.180) | 12 (0.120) | 11/240 | 10.8 | 9.2% | intergenic (+61/+56) | tagD/pbp4 | glycerol‑3‑phosphate cytidylyltransferase/penicillin‑binding protein 4 |
| ? | CP000730 | 715350 = | 121 (1.240) | intergenic (+108/+9) | tagD/pbp4 | glycerol‑3‑phosphate cytidylyltransferase/penicillin‑binding protein 4 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCCATTATTCACTATCATTGGTGGTACATGCCTTGTCGCTGGATTAGCACTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/715456‑715303‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATGATAGTGAATAATGGATGTTCTTCCCACATACTTTTAGCAACAGTATTT > CP000730/715350‑715488 ATCCATTATTCACTATCATTGGTGGTACATGCCTTGTCGCTGGATTAGCACTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAA > 2:659974/1‑141 TCCATTATTCACTATCATTGGTGGTACATGCCTTGTCGCTGGATTAGCACTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAA > 1:72407/1‑141 CCATTATTCACTATCATTGGTGGTACATGCCTTGTCGCTGGATTAGCACTTATTGTTCATATGATAATCAATCGTTTATTTAGAAACAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAAC > 2:1102821/1‑141 CCATTATTCACTATCATTGGTGGTACATGCCTTGTCGCTGGATTAGCACTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAAC < 1:299102/141‑1 CATTATTCACTATCATTGGTGGTACATGCCTTGTCGCTGGATTAGCACTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACT < 1:651993/141‑1 CATTATTCACTATCATTGGTGGTACATGCCTTGTCGCTGGATTAGCACTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACT > 2:97840/1‑141 TTATTCACTATCATTGGTGGTACATGCCTTGTCGCTGGATTAGCACTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTG > 2:28084/1‑141 ATTCACTATCATTGGTGGTACATGCCTTGTCGCTGGATTAGCACTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTC < 1:984243/141‑1 TTCACTATCATTGGTGGTACATGCCTTGTCGCTGGATTAGCACTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCC > 2:1074432/1‑141 TCACTATCATTGGTGGTGCATGCCTTGTCGCTGGATTAGCACTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCG < 1:374708/141‑1 ACTATCATTGGTGGTACATGCCTTGTCGCTGGATTAGCACTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTT > 1:991432/1‑141 TATCATTGGTGGTGCATGCCTTGTCGCTGGATTAGCACTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGACACTTGTACGTTgt > 2:1095065/1‑139 TATCATTGGTGGTACATGCCTTGTCGCTGGATTAGCACTTATTGTTAATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCCGCGAAACTTGTCCGTTTT < 1:969922/141‑1 CTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTG > 1:1205061/1‑141 CTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTG > 1:855828/1‑141 ATATGATAATCAATCGTTTATTTAGAAAAAGAACATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGATTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCAAAT > 1:1232234/1‑141 TAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAA > 1:994180/1‑141 AGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCG‑TTTTA‑TA‑‑‑TTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAG > 1:614372/1‑141 AAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTT > 1:67402/1‑69 AAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTT < 2:67402/69‑1 TTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATGATAGTGAATAATGGA > 1:119337/1‑141 TGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACTATTGTTTATCATATGAACAATAAGTTCTAATCCAGCGACAAGGCATGTACCACCAATGATAGTGAATAATGGAT > 2:13606/1‑141 GCACATTATAAAGCTGCGAAACTTGTCCGTATTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATGATAGTGAATAATGGATG > 2:1112898/1‑141 TATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAA > 1:230965/1‑58 TATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAA < 2:230965/58‑1 CTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATGATAGTGAATAATGGATGTTCTTCCCACATACTTTTAGC > 2:1125837/1‑141 TCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATGATAGTGAATAATGGATGTTCTTCCCACATACTTTTAGCAACA > 1:278199/1‑141 TCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATGATAGTGAATAATGGATGTTCTTCCCACATACTTTTAGCAACA > 1:1346621/1‑141 GTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATGATAGTGAATAATGGATGTTCTTCCCACATACTTTTAGCAACAGTA < 2:471380/141‑1 GTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATGATAGTGAATAATGGATGTTCTTCCCACATACTTTTAGCAACAGTA > 1:473041/1‑141 TTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATGATAGTGAATAATGGATGTTCTTCCCACATACTTTTAGCAACAGTAT < 2:582792/141‑1 TTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATGATAGTGAATAATGGATGTTCTTCCCACATACTTTTAGCAACAGTAT < 2:567385/141‑1 TTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATGATAGTGAATAATGGATGTTCTTCCCACATACTTTTAGCAACAGTATTT > 1:9497/1‑141 ATCCATTATTCACTATCATTGGTGGTACATGCCTTGTCGCTGGATTAGCACTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/715456‑715303‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATGATAGTGAATAATGGATGTTCTTCCCACATACTTTTAGCAACAGTATTT > CP000730/715350‑715488 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |