| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1878597 = | 99 (0.910) | 12 (0.130) | 10/232 | 11.0 | 11.8% | intergenic (+56/+61) | ytfP/fmtB1 | possible flavoprotein/cell surface anchored protein |
| ? | CP000730 | 1878652 = | 93 (0.990) | intergenic (+111/+6) | ytfP/fmtB1 | possible flavoprotein/cell surface anchored protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCTGAAGGAATGGATTTACCATTGAAAGAATTTGCACTGATTACAGGTGCGGCTTTGTTAGCTAGAAGACGTACTAAAAACGAAAAAGAATCATAATTAACGAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1878754‑1878597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttatattaaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGAACCTGTATTTGGAAGTTCTTTTTCAACTTTGCGCGA > CP000730/1878652‑1878789 TTCTGAAGGAATGGATTTACCATTGAAAGAATTTGCACTGATTACAGGTGCGGCTTTGTTAGCTAGAAGACGTACTAAAAACGAAAAAGAATCATAATTAACGAAATGACCTTAATATAACGACACTTTTTAGTGACTCAG > 2:894092/1‑141 AGGAATGGATTTACCATTGAAAGAATTTGCACTGATTACAGGTGCGGCTTTGTTAGCTAGAAGACGTACTAAAAACGAAAAAGAATCATAATTAACGAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATAT > 2:1049901/1‑141 GGAATGGATTTACCATGGAAAGAATTTGCACTGATTACAGGTGCGGCTTTGTTAGCTAGAAGACGTACTAAAAACGAAAAAGAATCATAATTAACGAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATT < 2:487382/141‑1 ATGGATTTACCATTGAAAGAATTTGCACTGATTACAGGTGCGGCTTTGTTAGCTAGAAGACGTACTAAAAACGAAAAAGAATCATAATTAACGAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAG < 1:259254/141‑1 ATGGATTTACCATTGAAAGAATTTGCACTGATTACAGGTGCGGCTTTGTTAGCTAGAAGACGTACTAAAAACGAAAAAGAATCATAATTAACGAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAG < 2:360754/141‑1 GATTTACCATTGAAAGAATTTGCACTGATTACAGGTGCGGCTTTGTTAGCTAGAAGACATACTAAAAACGAAAAAGAATCATAATTAACGATTTGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTC < 1:154132/141‑1 GATTTACCATTGAAAGAATTTGCACTGATTACAGGTGCGGCTTTGTTAGCTAGAAGAAGAAAAAAAAAAAAAAAAGAATCATAATTAACGAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTC < 2:279754/141‑1 GATTTACCATTGAAAGAATTTGCACTGATTACAGGTGAGGCTTTGTTAGCTAGAAGACGTACTAAAAACGAAAAAGAATCATAATTAACGAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTC > 1:1005130/1‑141 ATTTACCATTGAAAGAATTTGCACTGATTACAGGTGCGGCTTTGTTAGCTAGAAGACGTACTAAAAACGAAAAAGAATCATAATTAACGAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCA < 1:41656/141‑1 ATTTACCATTGAAAGAATTTGCACTGATTACAGGTGCGGCTTTGTTAGCTAGAAGACGTACTAAAAACGAAAAAGAATCATAATTAACGAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCA < 1:1106450/141‑1 TACCATTGAAAGAATTTGCACTGATTACAGGTGCGGCTTTGTTAGCTAGAAGACGTACTAAAAACGAAAAAGAATCATAATTAACGAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTT > 1:472122/1‑141 CCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCA > 2:476443/1‑141 CTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCTTTTTTTTTATGTCTTCTATCTCACAAAGCCGCACTTCTAATCAGTGCAATTTCTTTCAATGGTATATCCct > 2:67443/1‑139 TTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATT > 1:129782/1‑141 TTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAAT < 1:801362/120‑1 TTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAAT > 2:801362/1‑120 TAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTTTTTTTTTTTTTTTCTTCTAGCTAACAAAGCCGCACCTGTAATAAGTGCAAATTCTTTCAATGGTAAATTCATTC > 2:1289927/1‑141 ATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGC > 2:1236225/1‑111 ATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGC < 1:1236225/111‑1 ATAACGACACTCTTTAGTGCCTCAGTTATCTTAAGGTCATTCCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTCGCTAACAAAGCCGCACCTTTAATCAGTGCAAATTCTTTCAATGGTGAATCTATTCCTTC > 2:1001527/1‑141 AACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCTTTTTTTTTATTTCTTCTAGCTAACAAAGCTGCACCTTTAATTAGTTCAAATTCTTTCAATGGTAAATCCATTCCTTCtt > 2:53606/1‑139 TTAGTGACTCAGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGAACCTGTATTT > 2:486669/1‑141 TGACTCAGTTATATTAATGGCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGAACCTGTATTTGGAA > 1:1025929/1‑141 TTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCTTTTTTATTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCGAATTCTTTCAATGGTAAATGCATTCCTTCAGAACCTGGATTTGGAAGTTTTTTT > 2:1242378/1‑141 ATATTAAGGTCATTTCGTTAATTATGATTC‑TTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGAACCTGTATTTGGAAGTTCTTTTTCA < 2:637123/141‑1 TTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGAACCTGTATTTGGAAGTTCTTTTTCAAC < 2:683176/141‑1 TAAGGTCATTTCGTTAATTATGATTCTTTTTCTTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCATTCAATGGTAAATCCATTCCTTCAGAAACTGTATTTGGAAGTTCTTTTTCAACT > 2:1101124/1‑141 TAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGAACCTGTATTTGGA > 1:41313/1‑126 TAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGAACCTGTATTTGGA < 2:41313/126‑1 GGTCATTTCGTTAATTATGATTCTTTTTTTTTTTTTTTTCGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAGTTCTTTCAATGGTAATTCCATTCCTTCAGAACCTGTATTTGGATGTTCTTTTTCAACTTTt > 2:1017221/1‑140 GTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCCCCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCATAACCTGTATTTGGAAGTTCTTTTTCAACTTTGC < 1:722228/141‑1 GTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGAACCTGTATTTGGAAGTTCTTTTTCAACTTTGC < 2:129782/141‑1 TCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAGATCCATTCCTTCAGAACCTGTATTTGGAAGTTCTTTTTCAACTTTGCG < 2:1329787/141‑1 CATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGAACCTGTATTTGGAAGTTCTTTTTCAACTTTGCGC < 2:645531/141‑1 ATTTCGTTAATTATGATTCTTTTTTTTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGAACCTGTATTTGGAAGTTCTTTTTCAACTTTGCtct > 2:909421/1‑138 TTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGAACCTGTATTTGGAAGTTCTTTTTCAACTTTGCGCGA < 2:1120352/141‑1 TTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGAACCTGTATTTGGAAGTTCTTTTTCAACTTTGCGCGA < 2:918068/141‑1 TTCTGAAGGAATGGATTTACCATTGAAAGAATTTGCACTGATTACAGGTGCGGCTTTGTTAGCTAGAAGACGTACTAAAAACGAAAAAGAATCATAATTAACGAAATGACCTTAATATAACGACACTTTTTAGTGACTCAGTTATATTAAGGTCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1878754‑1878597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttatattaaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCCATTCCTTCAGAACCTGTATTTGGAAGTTCTTTTTCAACTTTGCGCGA > CP000730/1878652‑1878789 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |