New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 826356	28 (0.820)	3 (0.100)	3/246	5.0	11.2%	intergenic (+92/+78)	tagO/yvyE	hypothetical membrane protein/hypothetical membrane protein
	?	CP000730	= 826419	22 (0.710)					intergenic (+155/+15)	tagO/yvyE	hypothetical membrane protein/hypothetical membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAATATTAAATTTAATTAGTCGTAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTTACCGTCTTATGATAGTGCTTTTTATTTTTATTCAGTTGGTATATCGAAAGGTAACTGCTTTGGAGTTTCTTCAGTCAAATCGAAATTTCC  >  CP000730/826218‑826496                                                                                                                                           |                                                                                                                                             cAATATTAAATTTAATTAGTCGTAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGc                                                                                                                                            <  2:45641/141‑1 (MQ=255) cAATATTAAATTTAATTAGTCGTAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGc                                                                                                                                            <  2:146584/141‑1 (MQ=255)          aTTTAATTAGTCGTAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACgt                                                                                                                                   <  1:333848/141‑1 (MQ=255)              aaTTAGTCGTAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTAc                                                                                                                               >  1:110387/1‑141 (MQ=255)               aTTAGTCGTAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACt                                                                                                                              >  2:353183/1‑141 (MQ=255)                    tCGTAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAAt                                                                                                                         >  2:243294/1‑141 (MQ=255)                       tAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGt                                                                                                                      <  2:204622/141‑1 (MQ=255)                           tCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACt                                                                                                                                              >  1:29481/1‑113 (MQ=255)                           tCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACt                                                                                                                                              <  2:29481/113‑1 (MQ=255)                           tCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGtt                                                                                                                  <  2:201970/141‑1 (MQ=255)                             aTCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTta                                                                                                                >  1:385526/1‑141 (MQ=255)                                     aaGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACg                                                                                                        >  1:384978/1‑141 (MQ=255)                                        agGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCaa                                                                                                     <  2:241174/141‑1 (MQ=255)                                                ggAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATAtt                                                                                             <  1:238076/141‑1 (MQ=255)                                                ggAATGAAAGAATAGGTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATAtt                                                                                             <  2:129213/141‑1 (MQ=255)                                                        aGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTTACCGTCt                                                                                     <  2:264937/141‑1 (MQ=255)                                                              gCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAA‑TTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTTACCGTCTTATGATa                                                                              >  1:375743/1‑141 (MQ=255)                                                              gCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAA‑TTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTTACCGTCTTATGATa                                                                              >  1:375736/1‑141 (MQ=255)                                                                      ggATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTTACCGTCTTATGATAGTGCttt                                                                       <  2:286941/141‑1 (MQ=255)                                                                                tattatATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTTACCGTCTTATGATAGTGCTttttatttttat                                                             <  1:198340/141‑1 (MQ=255)                                                                                tattatATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTTACCGTCTTATGATAGTGCTttttatttttat                                                             >  1:118743/1‑141 (MQ=255)                                                                                        ggCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTTACCGTCTTATGATAGTGCTTTTTATTTTTATTCAGTTgg                                                     <  2:186447/141‑1 (MQ=255)                                                                                         gCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTTACCGTCTTATGATAGTGCTTTTTATTTTTATTCAGTTGGt                                                    >  1:19031/1‑141 (MQ=255)                                                                                          cTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTTACCGTCTTATGATAGTGCTTTTTATTTTTATTCAGTTGGta                                                   <  1:116502/141‑1 (MQ=255)                                                                                              aCTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTTACCGTCTTATGATAGTGCTTTTTATTTTTATTCAGTTGGTATATc                                               >  1:218343/1‑141 (MQ=255)                                                                                                            ttttGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTTACCGTCTTATGATAGTGCTTTTTCTTTTTATTCAGTTGGTATATCGAAAGGTAACTGCt                                 >  2:184789/1‑141 (MQ=255)                                                                                                                            aaaTATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTTACCGTCTTATGATAGTGCTTTTTATTTTTATTCAGTTGGTATATCGAAAGGTAACTGCTTTGGAGTTTCTTCAGt                 <  2:110387/141‑1 (MQ=255)                                                                                                                                    aaaGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTTACCGTCTTATGATAGTGCTTTTTATTTTTATTCAGTTGGTATATCGAAAGGTAACTGCTTTGGAGTTTCTTCAGTCAAATCGa         <  1:353183/141‑1 (MQ=255)                                                                                                                                      aGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAACACTACCCAATTGATATTTACCGTCTTATGATAGTGCTTTTTATTTTCATTCAGTTGGTATATCGAAAGGTAACTGCTTTGGAGTTTCTTCAGTCAAATCGaaa       <  2:76594/141‑1 (MQ=255)                                                                                                                                           tGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTAACCGACTTATGATAGGGCTTTTTATTTTTATTAAGTTGGTATATCGAAAGGTAACTGCTTTGGAGTTTATTCAGTCAAATCGAAATTTcc  >  1:290146/1‑141 (MQ=255)                                                                                                                                           |                                                                                                                                             CAATATTAAATTTAATTAGTCGTAAGTCATCTCATAAAGAGGAATAGGGAATGAAAGCATAGCTGTATGGGATAATTTGTATTATATGGCTTTACTCTTTACAATTTTTTTGTATTAAATTTCAAATATAAAAAGCACTGCCATAAACGTGTACTTCAATTGTCGTTTAATAATACGCAATTGATATTTACCGTCTTATGATAGTGCTTTTTATTTTTATTCAGTTGGTATATCGAAAGGTAACTGCTTTGGAGTTTCTTCAGTCAAATCGAAATTTCC  >  CP000730/826218‑826496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.