New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2121978	0 (0.000)	3 (0.040)	3/244	NT	100%	coding (132/177 nt)	USA300HOU_1999	hypothetical bacteriophage protein
	?	CP000730	= 2122008	NA (NA)					coding (102/177 nt)	USA300HOU_1999	hypothetical bacteriophage protein

CACATCATTTATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2121832‑2121978 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagttaCCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATGAT  <  CP000730/2122008‑2121869                                                                                                                                                                                                                                                                                                 CACATCATTTATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGA                                                                                                                                                    >  2:503364/1‑141  ACATCATTTATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCTTCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGAC                                                                                                                                                   >  1:582818/1‑141  ACATCATGTATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGAC                                                                                                                                                   <  1:893659/141‑1   CATCATTTATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACA                                                                                                                                                  >  1:699571/1‑141     TCATTTATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGT                                                                                                                                                <  1:876252/141‑1      taagacgCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTT                                                                                                                                               >  2:909656/8‑141                              CAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTATCA‑‑CTGACAAGGTAGGACTTGCC                                                                                                                     <  1:547495/141‑1                                      ATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTACCAAGCTGACAAGGTAGGACTTGCCAGTGAT                                                                                                               <  2:34678/141‑1                                            TTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGT                                                                                                         <  2:595702/141‑1                                                                                                                                                GTTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACAT     <  2:937481/141‑1                                                                                                                                                GTTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACAT     <  1:886647/141‑1                                                                                                                                                GTTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACAT     <  2:164987/141‑1                                                                                                                                                GTTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACAT     >  1:601682/1‑141                                                                                                                                                GTTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACAT     <  1:718323/141‑1                                                                                                                                                 TTAGCAAGCTGACAAGGTAGGACTTGCTAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAAGGTTAATGTCGAAATTCAAAACATG    >  2:1065160/1‑141                                                                                                                                                 TTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATG    >  2:300338/1‑141                                                                                                                                                 TTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATG    <  1:612448/141‑1                                                                                                                                                 TTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATG    >  2:170465/1‑141                                                                                                                                                   ACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATGAT  >  1:249903/1‑141                                                                                                                                                                                                                                                                                                 CACATCATTTATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2121832‑2121978 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagttaCCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATGAT  <  CP000730/2122008‑2121869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.