New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2121978	0 (0.000)	3 (0.040)	3/244	NT	100%	coding (132/177 nt)	USA300HOU_1999	hypothetical bacteriophage protein
	?	CP000730	= 2122008	NA (NA)					coding (102/177 nt)	USA300HOU_1999	hypothetical bacteriophage protein

TTTATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTATCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTC  >  CP000730/2121839‑2122118                                                                                                                                            |                                                                                                                                             tttATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTAt                                                                                                                                             >  1:1007009/1‑141 (MQ=32) tttATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTAt                                                                                                                                             >  1:443864/1‑141 (MQ=32)  ttATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTATc                                                                                                                                            >  1:136024/1‑141 (MQ=31)   tATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTATCa                                                                                                                                           <  2:752195/141‑1 (MQ=11)                       cAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTAtcactgacaaggtaggacttgcc                                                                                                                       <  1:547495‑M1/141‑24 (MQ=255)                               aTCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTAccaagctgacaaggtaggacttgccagtgat                                                                                                               <  2:34678‑M1/141‑32 (MQ=255)                                     ttttGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTAccaagctgacaaggtaggacttgccagtgataactgt                                                                                                         <  2:595702‑M1/141‑38 (MQ=255)                                                                                                                                         gTTAccaagctgacaaggtaggacttgccagtgataactgtcaacaaatagcaaataactataagcactatggattttaagatggataaggactatcgttattcttttcacctttaacgttaatgtcgaaatacaaaacat     <  1:718323‑M1/141‑138 (MQ=255)                                                                                                                                         gTTAccaagctgacaaggtaggacttgccagtgataactgtcaacaaatagcaaataactataagcactatggattttaagatggataaggactatcgttattcttttcacctttaacgttaatgtcgaaatacaaaacat     <  1:886647‑M1/141‑138 (MQ=255)                                                                                                                                         gTTAccaagctgacaaggtaggacttgccagtgataactgtcaacaaatagcaaataactataagcactatggattttaagatggataaggactatcgttattcttttcacctttaacgttaatgtcgaaatacaaaacat     >  1:601682‑M1/1‑4 (MQ=255)                                                                                                                                         gTTAccaagctgacaaggtaggacttgccagtgataactgtcaacaaatagcaaataactataagcactatggattttaagatggataaggactatcgttattcttttcacctttaacgttaatgtcgaaatacaaaacat     <  2:164987‑M1/141‑138 (MQ=255)                                                                                                                                         gTTAccaagctgacaaggtaggacttgccagtgataactgtcaacaaatagcaaataactataagcactatggattttaagatggataaggactatcgttattcttttcacctttaacgttaatgtcgaaatacaaaacat     <  2:937481‑M1/141‑138 (MQ=255)                                                                                                                                          ttAgcaagctgacaaggtaggacttgctagtgataactgtcaacaaatagcaaataactataagcactatggattttaagatggataaggactatcgttattcttttcacctttaaggttaatgtcgaaattcaaaacatg    >  2:1065160‑M1/1‑3 (MQ=255)                                                                                                                                          ttAccaagctgacaaggtaggacttgccagtgataactgtcaacaaatagcaaataactataagcactatggattttaagatggataaggactatcgttattcttttcacctttaacgttaatgtcgaaatacaaaacatg    >  2:170465‑M1/1‑3 (MQ=255)                                                                                                                                          ttAccaagctgacaaggtaggacttgccagtgataactgtcaacaaatagcaaataactataagcactatggattttaagatggataaggactatcgttattcttttcacctttaacgttaatgtcgaaatacaaaacatg    <  1:612448‑M1/141‑139 (MQ=255)                                                                                                                                          ttAccaagctgacaaggtaggacttgccagtgataactgtcaacaaatagcaaataactataagcactatggattttaagatggataaggactatcgttattcttttcacctttaacgttaatgtcgaaatacaaaacatg    >  2:300338‑M1/1‑3 (MQ=255)                                                                                                                                            accaagctgacaaggtaggacttgccagtgataactgtcaacaaatagcaaataactataagcactatggattttaagatggataaggactatcgttattcttttcacctttaacgttaatgtcgaaatacaaaacatgat  >  1:249903‑M1/1‑1 (MQ=255)                                                                                                                                            |                                                                                                                                             TTTATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTATCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTC  >  CP000730/2121839‑2122118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.