| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2609395 = | 83 (0.940) | 3 (0.040) | 3/234 | NT | 4.0% | intergenic (‑225/‑210) | USA300HOU_2471/USA300HOU_2472 | hypothetical protein/hypothetical protein |
| ? | CP000730 | 2609451 = | 68 (0.850) | intergenic (‑281/‑154) | USA300HOU_2471/USA300HOU_2472 | hypothetical protein/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATATTCAAAGAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2609546‑2609395‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagaagcttttTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTTCGCCTTT > CP000730/2609451‑2609590 ATATTCAAAGAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGT > 1:201073/1‑141 TATTCAAAGAACGGAAGTGTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACAGAAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTT < 2:799135/141‑1 ATTCAAAGAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTA > 1:112726/1‑141 ATTCAAAGAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTA < 2:22008/141‑1 CAAAGAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAA < 2:308751/141‑1 CAAAGAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGAACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAA < 2:147883/141‑1 AAGAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGC < 1:349531/141‑1 AGAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCT < 2:19790/141‑1 GAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGTAACCTCATATTCCGTATCATGTTAGAAGCTT > 2:290409/1‑141 aaGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTT < 2:290577/139‑1 AGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCT > 1:730904/1‑141 TCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGA > 1:261306/1‑141 CGTATCATGTTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCAT > 1:151980/1‑141 AGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTC < 1:791335/141‑1 GAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCT < 1:372662/141‑1 AAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTT < 1:859511/141‑1 AAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTT < 1:378097/141‑1 AGCTTGTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCACGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTAGAATATTCTTTAATTTCTTACTAATATAATCCAGTTCATTCTTC > 2:508048/1‑141 GCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTTCG > 2:649114/1‑141 CTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTCTTTAATTTCTTACTAATATCATCCAGTTCATTCTTCGC < 1:620525/141‑1 TTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTTCGCC < 1:816513/141‑1 TTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTTCGCC < 1:601761/141‑1 TTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTTCGCC < 2:616430/141‑1 TTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTTCGCCT > 1:53167/1‑141 TTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCCGTTCATTCTTCGCCTTT > 1:875403/1‑141 ATATTCAAAGAACGGAAGTTTAATAGCTTATATGATTCTTGGAGCTAAGACAGCATGCGTTCATTCATGCCATTATTAATATAAGCACCGCAACAAAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2609546‑2609395‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagaagcttttTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAATATTTTTTAATTTCTTACTAATATCATCCAGTTCATTCTTCGCCTTT > CP000730/2609451‑2609590 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |