New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2636366	65 (0.730)	3 (0.040)	3/236	NT	4.5%	intergenic (‑419/+50)	fnbA/gntP	fibronectin‑binding protein A/GntP family gluconate:proton (H+) symporter
	?	CP000730	= 2636392	69 (0.850)					intergenic (‑445/+24)	fnbA/gntP	fibronectin‑binding protein A/GntP family gluconate:proton (H+) symporter
Rejected: Frequency below/above cutoff threshold.

ACTAAACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2636218‑2636366 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaacgtgtttTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTGTG  <  CP000730/2636392‑2636253                                                                                                                                                                                                                                                                                                   ACTAAACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAA                                                                                                                                                      <  2:758470/141‑1  CTAAACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAA                                                                                                                                                     >  1:444240/1‑141    AAACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACG                                                                                                                                                   <  1:992520/141‑1     AACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGT                                                                                                                                                  <  1:825878/141‑1     AACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGT                                                                                                                                                  <  2:54942/141‑1     AACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGT                                                                                                                                                  >  1:297608/1‑141      ACGTTTCATAATTATCGCCTGTACAATACACACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGAATAAAAATAAACGTG                                                                                                                                                 <  2:257284/141‑1       CGTTTCATAATTAACGCCTGTACAATACGCCCAAACACATTTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGT                                                                                                                                                <  1:14484/141‑1         TTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTT                                                                                                                                              <  1:247137/141‑1                                          AACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACG                                                                                                             <  2:187891/141‑1                                              TGTCTTGAAACGCCTTTCATCACTCTAACATCCCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTA                                                                                                         <  2:1084095/141‑1                                                                         AAATCCCCAATATACTTTTTATATCGTTCGGATTCTGACTATTTCAGACGATTTTCTGCATAAAAATA                                                                                                                                                       <  2:915915/68‑1                                                                         AAATCCCCAATATACTTTTTATATCGTTCGGATTCTGACTATTTCAGACGATTTTCTGCATAAAAATA                                                                                                                                                       >  1:915915/1‑68                                                                                                                              ttaTGCAGAAAAATAAACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAG                         <  1:50938/138‑1                                                                                                                                             AACGTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATG          <  2:6068/141‑1                                                                                                                                                GTGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTT       <  2:83458/141‑1                                                                                                                                                 TGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTT      <  1:133998/141‑1                                                                                                                                                 TGTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTT      <  1:441353/141‑1                                                                                                                                                  GTTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTT     >  2:424759/1‑141                                                                                                                                                   TTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTTATGAAAGGCGTTTCAAGACATGTTTTTt    >  2:1043033/1‑140                                                                                                                                                   TTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTG    <  2:564392/141‑1                                                                                                                                                   TTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTG    >  2:181214/1‑141                                                                                                                                                   TTTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTG    <  2:564317/141‑1                                                                                                                                                    TTTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTGT   <  2:611945/141‑1                                                                                                                                                     TTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTGTG  <  1:42397/141‑1                                                                                                                                                     TTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTGTG  <  2:904960/141‑1                                                                                                                                                                                                                                                                                                   ACTAAACGTTTCATAATTATCGCCTGTACAATACGCACAAAAACATGTCTTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2636218‑2636366 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaacgtgtttTTAGGTAATTGCAATATATTGCCTTGAAACACGTTTATTTTTATGCAGAAAATCGTCTGAAATACTCAGAATCCGAACGATATAAAAAGTATATTGGGTATTTTAGAGTGATGAAAGGCGTTTCAAGACATGTTTTTGTG  <  CP000730/2636392‑2636253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.