New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 551684 =38 (1.030)4 (0.110) 3/244 NT 11.1% intergenic (+13/‑203) cysK/sul cysteine synthase/dihydropteroate synthase, subunit A
?CP000730 551723 = 28 (0.800)intergenic (+52/‑164) cysK/sul cysteine synthase/dihydropteroate synthase, subunit A

CAGGTGCTGCGATTTATGCTGCCATTCAAAAAGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATACTAATAA  >  CP000730/551544‑551823
                                                                                                                                            |                                                                                                                                           
tgtttaactctaataaaatttactcctgctatttactagttattagtatgtacgtttattatcttatcattcactggatatttttatcagaaaaatgtttaatttaacgctcatatttttaaaaatatacatggtagaaaa                                                                                                                                             >  1:117067‑M1/141‑141 (MQ=255)
  ggTGCTGCGATTTATGCTGCCATTCAAAAAGCAAAAGAATTAAGAAAAGGTAAAACAGTAGTAACAGTATTGACGAGTAATGGTGAACGCTACTTATCAACACCTATATATTCATTCGATGACTAATTAATGTCATTTaaa                                                                                                                                           <  2:366255/141‑1 (MQ=255)
     gctgcGATTTATGCTGCCATTCAAAAAGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAaga                                                                                                                                        >  2:223065/1‑141 (MQ=255)
            tttATGCCGCCATTCAAAAAGCAAAAGGATTAGGCAAAGGTCACACAGTAGTAACAGTATTGCCGAGGAACTGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAgagtgaggt                                                                                                                                 >  2:411915/1‑139 (MQ=255)
                  ctgcCATTCAAAAAGCAAAAGAATTAGGAAAAGNTAANACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCAGTCGATGACTAATTAATGTTATTTAAAAGAGTGAGTTGGCttt                                                                                                                           >  1:383441/1‑141 (MQ=255)
                    gcCATTCAAAAAGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCttttt                                                                                                                         <  1:83103/141‑1 (MQ=255)
                    gcCATTCAAAAAGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCttttt                                                                                                                         >  1:153716/1‑141 (MQ=255)
                    gcCATTCAAAAAGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCttttt                                                                                                                         >  1:370176/1‑141 (MQ=255)
                          cAAAAAGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATa                                                                                                                   >  1:56717/1‑141 (MQ=255)
                            aaaaGCAAAAGAATTAGGAAAAGGTAAGACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATATTTTTGAGATAAc                                                                                                                 >  2:359769/1‑141 (MQ=255)
                            aaaaGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAAc                                                                                                                 >  2:230854/1‑141 (MQ=255)
                                    aaGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCtt                                                                                                         >  1:372900/1‑141 (MQ=255)
                                     agttattagtatgtacgtttattatcttatcattcactggatatttttatcagaaaaatgtttaatttaacgctcatatttttaaaaatatacatggtagaaaAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCttt                                                                                                        >  1:198349‑M1/104‑141 (MQ=255)
                                      gAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCtttt                                                                                                       >  2:164718/1‑141 (MQ=255)
                                       aaTTAGGAAAAGTTAAAACACTAGTAACAGTATTGCCGAGAAATGGTGAACGCTACTTATCAACACCTTTATATTTATTCGATGACTCTTTAATCTCTTTTAAAAGAGTGAGTTATCTTTTTGAGTTAACTTGCTCttttt                                                                                                      <  2:84346/141‑1 (MQ=255)
                                       aaTTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATATAATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCttttt                                                                                                      <  2:29447/141‑1 (MQ=255)
                                        aTTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCtttttt                                                                                                     <  2:76373/141‑1 (MQ=255)
                                             gAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTAc                                                                                                >  2:71330/1‑141 (MQ=255)
                                                 aGGTAAAACAGTGGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATg                                                                                            <  2:366805/141‑1 (MQ=255)
                                                 aGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATg                                                                                            <  1:85053/141‑1 (MQ=255)
                                                  ggTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGt                                                                                           >  1:226789/1‑141 (MQ=255)
                                                  ggTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGt                                                                                           >  1:360302/1‑141 (MQ=255)
                                                    tAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGtat                                                                                         >  2:191459/1‑141 (MQ=255)
                                                             agtaACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGCTAACTTGCTCTTTTTTTCTACCATGTATATTTTTaaa                                                                                >  1:17368/1‑141 (MQ=255)
                                                                   aGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTACATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATg                                                                          <  2:424152/141‑1 (MQ=255)
                                                                        tGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGt                                                                     <  1:145054/141‑1 (MQ=255)
                                                                        tGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTATTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGt                                                                     <  2:98928/141‑1 (MQ=255)
                                                                         gCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTTAGATAACTTGCTCTTTTTTTTTTTCATGTATATTTTTAATAATATGAGCGtt                                                                    >  2:125716/1‑141 (MQ=255)
                                                                            gcgTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTTATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGttaaa                                                                 >  2:326794/3‑141 (MQ=255)
                                                                                  tGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAAc                                                           >  2:452390/1‑141 (MQ=255)
                                                                                   ggTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACa                                                          >  1:229253/1‑141 (MQ=255)
                                                                                            tACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGa                                                 <  2:56717/141‑1 (MQ=255)
                                                                                                 aTCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATaaaa                                            <  1:110545/141‑1 (MQ=255)
                                                                                                    aaCACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTCACTGCAACATGTTTCTGATAAAAata                                         <  2:457747/141‑1 (MQ=255)
                                                                                                        ccTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCa                                     >  1:381618/1‑141 (MQ=255)
                                                                                                              tatTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGCAt                               >  2:334355/1‑141 (MQ=255)
                                                                                                                    ttcGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTTATAAAAATATCCAGTGAATgataag                         <  2:196859/141‑1 (MQ=255)
                                                                                                                              aattaatGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAAcc               >  2:239843/1‑140 (MQ=255)
                                                                                                                                  atggtagaaaAAAAGAGCAAGTTATCTCAAAAAGATAACTCACTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTTATAAAAATATCTAGTGAATGATAAGATAATAAACGTACa           <  2:240964‑M1/131‑1 (MQ=255)
                                                                                                                                   tggtagaaaAAAAGAGCAAGTTATCTCAAAAAGATAACTCACTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACAt          <  2:328785‑M1/132‑1 (MQ=255)
                                                                                                                                   tggtagaaaAAAAGAGCAAGTTATCTCAAAAAGATAACTCACTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACAt          <  2:21326‑M1/132‑1 (MQ=255)
                                                                                                                                   atGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTTTAATTATGTGCGTTAAATTAAACATTTTTCTGATAAAAATATACAGTGAATGATAAGATAATAAACGTACAt          >  2:177073/1‑141 (MQ=255)
                                                                                                                                   atGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTACTACCTTGTATATTTGTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACAt          <  1:316792/141‑1 (MQ=255)
                                                                                                                                    tGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATa         <  1:30357/141‑1 (MQ=255)
                                                                                                                                           tAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTTTACCTTGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTGTGATTAAAATATCCAGTGAATTATAAGATAAGTAACGTACAtactaagaa  <  2:83680‑M1/140‑4 (MQ=255)
                                                                                                                                            |                                                                                                                                           
CAGGTGCTGCGATTTATGCTGCCATTCAAAAAGCAAAAGAATTAGGAAAAGGTAAAACAGTAGTAACAGTATTGCCGAGTAATGGTGAACGCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGTACATACTAATAA  >  CP000730/551544‑551823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.