| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 452719 | 28 (0.970) | 3 (0.110) | 3/248 | 3.8 | 10.1% | coding (573/696 nt) | set21 | staphylococcal exotoxin |
| ? | CP000730 | = 452762 | 27 (0.990) | coding (616/696 nt) | set21 | staphylococcal exotoxin | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGAAAAGTCTAAAGATAGTAAATTTAAAATTACTAAAGAAGAAATCTCGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/452578‑452719‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtagttTTTTTGTAAGTTCGAAAGTATAAAACTTATCATCTTCCATTTTAACTACAATTTTACCTTTTCTATTATTAACAGCACCATATAATTTTTCTTCTTCCATCAATTTTTTTCTTAATTTAAAGTCCAACTCTTTTAACGAG < CP000730/452762‑452623 GGAAAAGTCTAAAGATAGTAAATTTAAAATTACTAAAGAAGAAATCTCGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAACATTGTAGT < 2:103144/141‑1GGAAAAGTCTAAAGATAGTAAATTTAAAATTACTAAAGAAGAAATCTCGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGT < 1:191431/141‑1 GTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTTTTTTGTAAGTTCGAAAGTATAAAACTTATCATCTTCCATTTTA < 2:260226/129‑1 GTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTTTTTTGTAAGTTCGAAAGTATAAAACTTATCATCTTCCATTTTA > 1:260226/1‑129 GTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCCGTTAATAATAGAAAAGGTAAAATTGTAGTTTTTTTGTAAGTTCGAAAGTATAAAACTTATCATCTTCCATTTTAACTACAATTTTA < 1:13622/141‑1 TGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGT < 2:231097/52‑1 TGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGT > 1:231097/1‑52 TAGTTTTTTTGTAAGTTCGAAAGTATAAAACTTATCATCTTCCATTTTAACTACAATTTTACCTTTTCTATTATTAACAGCACCATATAATTTTTCTTCTTCCATCAATTTTTTTCTTAATTTAAAGTCCAACTCTTTTAA > 1:86744/1‑141 GTTTTTTTGTAAGTTCGAAAGTATAAAACTTATCATCTTCCATTTTAACTACAATTTTACCTTTTCTATTATTAACAGCACCATATAATTTTTCTTCTTCCATCAATTTTTTTCTTAATTTAAAGTCCAACTCTTTTAACG < 1:262147/141‑1 GTTTTTTTGTAAGTTCGAAAGTATAAAACTTATCATCTTCCATTTTAACTACAATTTTACCTTTTCTATTATTAACAGCACCATATAATTTTTCTTCTTCCATCAATTTTTTTCTTAATTTAAAGTCCAACTCTTTTAACG < 2:53571/141‑1 TTTTTTTGTAAGTTCGAAAGTATAAAACTTATCATCTTCCATTTTAACTACAATTTTACCTTTTCTATTATTAACAGCACCATATAATTTTTCTTCTTCCATCAATTTTTTTCTTAATTTAAAGTCCAACTCTTTTAACGA < 2:304334/141‑1 TTTTTTGTAAGTTCGAAAGTATAAAACTTATCATCTTCCATTTTAACTACAATTTTACCTTTTCTATTATTAACAGCACCATATAATTTTTCTTCTTCCATCAATTTTTTTCTTAATTTAAAGTCCAACTCTTTTAACGAG > 1:139487/1‑141 GGAAAAGTCTAAAGATAGTAAATTTAAAATTACTAAAGAAGAAATCTCGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/452578‑452719‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtagttTTTTTGTAAGTTCGAAAGTATAAAACTTATCATCTTCCATTTTAACTACAATTTTACCTTTTCTATTATTAACAGCACCATATAATTTTTCTTCTTCCATCAATTTTTTTCTTAATTTAAAGTCCAACTCTTTTAACGAG < CP000730/452762‑452623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |