New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 45271928 (0.970)3 (0.110) 3/248 3.8 10.1% coding (573/696 nt) set21 staphylococcal exotoxin
?CP000730 = 452762 27 (0.990)coding (616/696 nt) set21 staphylococcal exotoxin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCTCGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCTTTGGACAAGCAGACTAGTAATTGTAGGGAAGTTAAGCGATAACATATTGCTTAGC  >  CP000730/452622‑452900
                                                                                                                                            |                                                                                                                                          
tctcGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACaaaaa                                                                                                                                            >  2:86744/1‑141 (MQ=255)
 ctcGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACaaaaaa                                                                                                                                           <  1:139487/141‑1 (MQ=255)
  tcGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACaaaaaaa                                                                                                                                          >  2:304334/1‑141 (MQ=255)
   cGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAAc                                                                                                                                         >  2:53571/1‑141 (MQ=255)
   cGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAAc                                                                                                                                         >  1:262147/1‑141 (MQ=255)
     ttAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTa                                                                                                                                       <  1:86744/141‑1 (MQ=255)
              ttGGACTTTAAATTAACAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACcgcat                                                                                                                              <  1:193780/141‑1 (MQ=255)
                        aaTTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTg                                                                                                                    <  2:60262/141‑1 (MQ=255)
                            aaGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGacac                                                                                                                <  2:177588/141‑1 (MQ=255)
                                         aTGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTAcc                                                                                                   <  1:162730/141‑1 (MQ=255)
                                         aTGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTAcc                                                                                                   <  1:301282/141‑1 (MQ=255)
                                         aTGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGCTAACATTGTAGTTAATGTAGACAATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTAcc                                                                                                   <  1:242514/141‑1 (MQ=255)
                                            gaagaagaaAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCaaa                                                                                                <  1:22245/141‑1 (MQ=255)
                                                     aaaTTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGaa                                                                                       <  2:191894/141‑1 (MQ=255)
                                                             tGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGt                                                                               <  1:100370/141‑1 (MQ=255)
                                                                        ataataGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAat                                                                    >  2:5387/1‑141 (MQ=255)
                                                                                aaaGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATataaataa                                                            >  1:185751/1‑141 (MQ=255)
                                                                                  aGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATc                                                          >  1:45639/1‑141 (MQ=255)
                                                                                   ggTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCt                                                         >  2:224995/1‑141 (MQ=255)
                                                                                    gTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCtt                                                        >  1:10992/1‑141 (MQ=255)
                                                                                                  aaaaTGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCTTTGGACAAGCAGACt                                          <  2:265021/141‑1 (MQ=255)
                                                                                                  aaaaTGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCTTTGGACAAGCAGACt                                          >  1:60463/1‑141 (MQ=255)
                                                                                                  aaaaTGGAAGATGATAAGTTATATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCTTTGGACAAGCAGACt                                          <  2:243147/141‑1 (MQ=255)
                                                                                                    aaTGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCTTTGGACAAGCAGACTAg                                        <  1:160668/141‑1 (MQ=255)
                                                                                                               atAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCTTTGGACAAGCAGACTAGTAATTGTAggg                             >  2:313930/1‑141 (MQ=255)
                                                                                                                   gTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCTTTTGACAAGCAGACGAGTAATTGTAGGGAAGt                         >  2:120163/1‑141 (MQ=255)
                                                                                                                                   cTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCTTTGGACAAGCAGACTAGTAATTGTAGGGAAGTTAAGCGATAACATAtt         >  2:103677/1‑141 (MQ=255)
                                                                                                                                     tACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCaaa                                                                                          <  1:31561/58‑1 (MQ=255)
                                                                                                                                     tACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCaaa                                                                                          >  2:31561/1‑58 (MQ=255)
                                                                                                                                     tACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCt                                                                         >  1:144644/1‑75 (MQ=255)
                                                                                                                                     tACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCt                                                                         <  2:144644/75‑1 (MQ=255)
                                                                                                                                     tACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCTTTGGACAAGCAGACTAGTAATTGTAGGGAAGTTAAGCGATAACATATTGc       >  2:64096/1‑141 (MQ=255)
                                                                                                                                          aaaaaCTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTGATGTTGAGCTAGAATATAAATAATCTTTGGACAAGCAGACTCGTAATTGTAGGGAAGTTAAGCGATAACATATTACCTAGc  >  1:187957/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                          
TCTCGTTAAAAGAGTTGGACTTTAAATTAAGAAAAAAATTGATGGAAGAAGAAAAATTATATGGTGCTGTTAATAATAGAAAAGGTAAAATTGTAGTTAAAATGGAAGATGATAAGTTTTATACTTTCGAACTTACAAAAAAACTACAACCGCATCGCATGGGTGACACGATAGATGGTACCAAAATCAAAGAAATTAATGTTGAGCTAGAATATAAATAATCTTTGGACAAGCAGACTAGTAATTGTAGGGAAGTTAAGCGATAACATATTGCTTAGC  >  CP000730/452622‑452900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.