mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 70 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 1,929,867 | 0 | G | T | 70.3% | 36.6 / 33.8 | 37 | intergenic (‑950/‑218) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,870 | 0 | A | C | 70.3% | 67.7 / 24.8 | 37 | intergenic (‑953/‑215) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,866 | 0 | G | T | 68.6% | 31.7 / 34.2 | 37 | intergenic (‑949/‑219) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,872 | 0 | G | A | 68.4% | 38.6 / 29.9 | 38 | intergenic (‑955/‑213) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,875 | 0 | T | C | 68.4% | 50.0 / 28.2 | 38 | intergenic (‑958/‑210) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,873 | 0 | C | A | 67.6% | 33.3 / 38.1 | 38 | intergenic (‑956/‑212) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,861 | 0 | T | C | 63.4% | 34.2 / 37.7 | 41 | intergenic (‑944/‑224) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 36,269 | 0 | C | T | 62.3% | 86.0 / 226.5 | 204 | A95T (GCA→ACA) | tpn | IS431mec transposase |
| * | CP000730 | 36,124 | 0 | G | A | 61.6% | 72.5 / 180.4 | 161 | A143V (GCT→GTT) | tpn | IS431mec transposase |
| * | CP000730 | 36,315 | 0 | G | A | 61.2% | 100.9 / 246.6 | 220 | Y79Y (TAC→TAT) | tpn | IS431mec transposase |
| * | CP000730 | 36,087 | 0 | A | G | 61.0% | 124.1 / 204.7 | 201 | C155C (TGT→TGC) | tpn | IS431mec transposase |
| * | CP000730 | 36,413 | 0 | C | T | 59.4% | 33.3 / 117.1 | 97 | V47I (GTC→ATC) | tpn | IS431mec transposase |
| * | CP000730 | 1,929,842 | 0 | T | . | 59.1% | 15.2 / 88.9 | 44 | intergenic (‑925/‑243) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,843 | 0 | A | . | 59.1% | 16.8 / 87.3 | 44 | intergenic (‑926/‑242) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,848 | 0 | C | A | 59.1% | ‑0.3 / 64.3 | 44 | intergenic (‑931/‑237) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,865 | 0 | A | C | 56.4% | 29.8 / 45.7 | 39 | intergenic (‑948/‑220) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,862 | 1 | . | T | 53.7% | 78.3 / 77.0 | 41 | intergenic (‑945/‑223) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 35,876 | 0 | C | T | 53.5% | 16.4 / 57.3 | 44 | intergenic (+107/+1) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 76,295 | 0 | T | C | 52.1% | 23.0 / 189.3 | 144 | intergenic (+353/‑781) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase |
| * | CP000730 | 35,970 | 0 | T | C | 51.0% | 45.2 / 215.8 | 153 | E194E (GAA→GAG) | tpn | IS431mec transposase |