New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_KO_pgi	3654539 =	33 (0.910)	4 (0.120)	4/258	4.5	11.1%	intergenic (+12/‑144)	slp/dctR	outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport
	?	NC_000913_3_KO_pgi	3654568 =	34 (1.020)					intergenic (+41/‑115)	slp/dctR	outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTTGAGAGAAGTGGTTAATACCACCTATAACCTGTGGGATTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATAAAGTTAATGTCCGCACCAGGAGTCGGTTAT  >  NC_000913_3_KO_pgi/3654394‑3654684                                                                                                                                                  |                                                                                                                                                  aTTTGAGAGAAGTGGTTAATACCACCTATAACCTGTGGGATTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACCCCCATGCGGTGCGTCAGGTTACACCTGAGCTTGTCAAATAACACCACCGAAagatg                                                                                                                                                <  2:381264/149‑1 (MQ=255) aTTTGAGAGAAGTGGTTAATACCACCTATAACCTGTGGGATTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTCACACCTGAGCTGGTCAAATAACACCACCGAAagatg                                                                                                                                                >  1:178733/1‑149 (MQ=255)   ttGAGAGAAGTGGTTAATACCACCTATCATTGATTTTGTTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAagagatc                                                                                                                                              >  1:631191/1‑145 (MQ=255)       gagaAGTGGTTAATACCACCTATAACCTGTGGGATTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCCGGTAACACCTGAGCTGGTCAAATAACAACACAGCAcgactcagatg                                                                                                                                          >  2:281335/1‑149 (MQ=255)          aaGTGGTTAATACCACCTATAACCTGTGGGATTACGGCTATGGTGCATTCTGGCTGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCtt                                                                                                                                       >  1:351426/1‑149 (MQ=255)                  cctACCACCTATAACCTGTGGGACTTCGTCTGTCGTGCATTCTGGCCAGAACGCGGCTGGGGTGCGCCTTAGTCCACCAATGGGGTGAACCGGGTAACACCGGGCGTGGTCAAATTAAACCCCCGTACGATACGAATGCTTTCTCaacc                                                                                                                               >  2:48197/3‑146 (MQ=255)                       caccTATAACCTGTGGGATTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGACTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGGCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGc                                                                                                                          >  1:472644/1‑149 (MQ=255)                                 gtgtgGGATTACGGCTATGATGCATTCTGGCAGGAACCGGGCGGGGGTGCGCCTTACTACACCAAAGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCGACGCAAGATGCAGATACTTTCTCAGGAACTGCATCATGCAtt                                                                                                                >  2:338379/2‑149 (MQ=255)                                  tgtgGGATTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTa                                                                                                               >  1:135857/1‑149 (MQ=255)                                               cTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATa                                                                                                  <  1:132927/149‑1 (MQ=255)                                                     tGCATTCTGGCCGGAACCGGGATGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGt                                                                                            >  2:461858/1‑149 (MQ=255)                                                                   aaCCGGGCTGGGGGGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACtattat                                                                              <  1:225504/149‑1 (MQ=255)                                                                       gggCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACtattattatt                                                                          <  1:449793/149‑1 (MQ=255)                                                                              ggTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGc                                                                                                                                <  1:360017/88‑1 (MQ=255)                                                                              ggTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGc                                                                                                                                >  2:360017/1‑88 (MQ=255)                                                                                          tacACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATacac                                                                                               >  1:401823/1‑109 (MQ=255)                                                                                          tacACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATacac                                                                                               <  2:401823/109‑1 (MQ=255)                                                                                           acacCAATACGGTGAGTCACGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCGGCATCATGCATTATAGCAAATTAAGACACAGTAAGCTAACTAATTGTCTTATGAGCCCTGTCCTGTTAAt                                                      >  2:540206/1‑149 (MQ=255)                                                                                                aaTGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATtata                                                                       <  2:152143/127‑1 (MQ=255)                                                                                                aaTGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATtata                                                                       >  1:152143/1‑127 (MQ=255)                                                                                                     ggTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTAACTTTGGc                                            >  1:248828/1‑149 (MQ=255)                                                                                                       tGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGAGGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATATGCCCTGTCCTGTTAATTACCTTTGGCaa                                          >  1:290265/1‑149 (MQ=255)                                                                                                              ggTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGAtt                                   >  2:269114/1‑149 (MQ=255)                                                                                                              ggTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGAtt                                   >  2:492034/1‑149 (MQ=255)                                                                                                              ggTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGAtt                                   <  1:492034/149‑1 (MQ=255)                                                                                                                   cacCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCGTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATaaa                              <  2:294560/149‑1 (MQ=255)                                                                                                                    acCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATGATAAAg                             >  1:481724/1‑149 (MQ=255)                                                                                                                         aGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATAAAGTTAAt                        <  2:472644/149‑1 (MQ=255)                                                                                                                                      accccaccGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCTTGTCCTGTTAATTACCTTTGGCAAACTGATTATAATGTTAATGTCCGCACCAGGa           <  2:216400/146‑1 (MQ=255)                                                                                                                                              gAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGAt                                    <  2:549283/116‑1 (MQ=255)                                                                                                                                              gAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTGAATTACCTTTGGCAAACTGAt                                    >  1:549283/1‑116 (MQ=255)                                                                                                                                              aaaaCATTCAGATGCCTTCTCAGGATCTGCATCATGCATTACATCGAATTAATACACAGTAATCTAACTATTATTATTCTAAGCCCGATCCTGTTAATTACCTTTGGCAATCTGATTATGAAGTTAATGTCCGCACCAGGAGTCGGTTa   <  1:540206/148‑1 (MQ=255)                                                                                                                                               aaaGATGCAGATGCTTTCTCAGCATCTGCAGCATGCATTACATCAAATTAATACCCAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATAAAGTTAATGTCCGCACCAGGAGTCGGTTAt  <  1:523012/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  ATTTGAGAGAAGTGGTTAATACCACCTATAACCTGTGGGATTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATAAAGTTAATGTCCGCACCAGGAGTCGGTTAT  >  NC_000913_3_KO_pgi/3654394‑3654684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.