| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 81852 | 11 (0.630) | 5 (0.300) | 4/260 | 1.8 | 32.8% | coding (107/1092 nt) | leuB | 3‑isopropylmalate dehydrogenase, NAD(+)‑dependent |
| ? | NC_000913_3_pae_pgi | = 81864 | 10 (0.600) | coding (95/1092 nt) | leuB | 3‑isopropylmalate dehydrogenase, NAD(+)‑dependent | |||||
ACGGCATCGGCTTGCTCACAACCTTCAACCGTCGCAGGCGGCAGTGGTTGCCCGTGGTTATCAATGGCTGCGCCGCCTACATCGTAATGGCTGGTGGTGATGCGCATCGCAAAGCGGTTGCGCACGGCATCCAGCACTTTCAGCGCCTGGGTCATCACTTCCGGACCAATACCGTCCCCCGGCAATACGGCAATATGGTAATTCTTCGACATCACACGGTTTCCTTGTTGTTTTCGTTGTGTTGAGCTTTGCGTTGCAACT > NC_000913_3_pae_pgi/81747‑82007 | aCGGCATCGGCTTGCTCACAACCTTCAACCGTCGCAGGCGGCAGTGGTTGCCCGTGGTTATCAATGGCTGCGCCGCCTACATCGTAATGGCTGGTGGTGATGCGCATCGCAAAGCGGTTGCGCACGGCATCCAGCACTTTCAGCGCCTgg < 1:77222/150‑1 (MQ=255) ccGTCGCAGGCGGCAGTGGTTGCCCGTGGTTATCAATGGCTGCGCCGCCTACATCGTAATGGCTGGTGGTGATGCGCATCGCAAAGCGGTTGCGCACGGCATCCAGCACTTTCAGCGCCTGGGTCATCACTTCCGGACCAATACCGTccc > 4:26664/1‑150 (MQ=255) aTGGCTGCGCCGCCTACATCGTAATGGCTGGTGGTGATGCGCATCGCAAAGCGGTTGCGCACGGCATCCAGCACTTTCAGCGCCTGGGTCATCACTTCCGGACCAATACCGTCCCCCGGCAATACGGCAATATGGTAATTCTTCGACATc > 3:20372/1‑150 (MQ=255) gggcgcCGCCTACGGCGTGGTGGCGGGGGGGGATGCGCATCGCAAAGCGGTTGCGCACGGCATCCAGCACTTGCAGCGCCTGGGTCATCACTTCCGGACCAATACCGTCCCCCGGCAATACGGCAATATGGTAATTCTTCGACATcctgt < 4:73218/148‑5 (MQ=255) gccTACATCGTAATGGCTGGTGGTGATGCGCATCGCAAAGCGGTtgcgcatcaccacccgccattacgatgtaggccgcgcagccattgataaccaccggcaaccaccgctgcctgcgacggttgaaggttgtgcgcaagccgatgccgc < 3:105273‑M2/150‑107 (MQ=255) aCATCGTAATGGCTGGTGGTGATGCGCATCGCAAAGCGGTTGCGCACGGCATCCAGCACTTTCAGCGCCTGGGTCATCACTTCCGGACCAATACCGTCCCCCGGCAATACGGCAATATGGTAATTCTTCGACATCACACGGTTTCCttgt > 2:177579/1‑150 (MQ=255) tGGCTGGTGGTGATGCGCATCGCAAAGCGGTTGCGCACGGCATCCAGCACTTTCAGCGCCTGGGTCATCACTTCCGGACCAATACCGTCCCCCGGCAATACGGCAATATGGTAATTCTTCGACATCACACGGTTTCCTTGTTGTTTTCGt < 1:177579/150‑1 (MQ=255) tggtggTGATGCGCATCGCAAAGCGGTTGCGCACGGCATCCAGCACTTTCAGCGCCTGGGTCATCACTTCCGGACCAATACCGTCCCCCGGCAATACGGCAATATGGTAATTCTTCGACATCACACGGTGTCCGTGTTGTTTTCGTtgtg > 3:122859/1‑150 (MQ=255) gtggtgATGCGCATCGCAAAGCGGTTGCGCACGGCATCCAGCACTTTCAGCGCCTGGGTCATCACTTCCGGACCAATACCGTCCCCCGGCAATACGGCAATATGGTAATTCTTCGACATCACACGGTTTCCTTGTTGttt < 1:124934/140‑1 (MQ=255) gtggtgATGCGCATCGCAAAGCGGTTGCGCACGGCATCCAGCACTTTCAGCGCCTGGGTCATCACTTCCGGACCAATACCGTCCCCCGGCAATACGGCAATATGGTAATTCTTCGACATCACACGGTTTCCTTGTTGttt > 2:124934/1‑140 (MQ=255) gcgcATCGCAAAGCGGTtgcgcatcaccaccagccattacgatgtaggcggcgcagccattgataaccacgggcaaccactgccgcctgcgacggttgaaggttgtgagcaagccgatgccgtgctgtttggctcggtaggcggcccgaa < 2:170656‑M2/150‑134 (MQ=255) gcgcATCGCAAAGCGGTtgcgcatcaccaccagccattacgatgtaggcggcgcagccat < 1:180210‑M2/60‑44 (MQ=255) gcgcATCGCAAAGCGGTtgcgcatcaccaccagccattacgatgtaggcggcgcagccat > 2:180210‑M2/1‑17 (MQ=255) gcCTCGCAAAGCGGTtgcgcatcaccaccagccattacgatgtaggcggcgcagccattgataaccacgggcaaccactgccgcctgcgacggttgccggctgcgcgcaagccgatgccgcgctgttcggctcggtaggccgcccgaagt < 2:56696‑M2/150‑136 (MQ=255) aaGCGGTTGCGCACGGCATCCAGCACTTTCAGCGCCTGGGTCATCACTTCCGGACCAATACCGTCCCCCGGCAATACGGCAATATGGTAATTCTTCGACATCACACGGTTTCCTTGTTGTTTTCGTTGTGTTGAGCTTTGCGTTGCAAct < 3:101380/150‑1 (MQ=255) | ACGGCATCGGCTTGCTCACAACCTTCAACCGTCGCAGGCGGCAGTGGTTGCCCGTGGTTATCAATGGCTGCGCCGCCTACATCGTAATGGCTGGTGGTGATGCGCATCGCAAAGCGGTTGCGCACGGCATCCAGCACTTTCAGCGCCTGGGTCATCACTTCCGGACCAATACCGTCCCCCGGCAATACGGCAATATGGTAATTCTTCGACATCACACGGTTTCCTTGTTGTTTTCGTTGTGTTGAGCTTTGCGTTGCAACT > NC_000913_3_pae_pgi/81747‑82007 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |