mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 3,763,974 | 0 | A | G | 42.9% | 35.1 / 83.1 | 70 | I598V (ATC→GTC) ‡ | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 3,763,975 | 0 | T | C | 39.7% | 54.6 / 80.8 | 78 | I598T (ATC→ACC) ‡ | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 3,763,992 | 0 | G | A | 39.6% | 94.5 / 121.3 | 111 | A604T (GCC→ACC) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 3,941,891 | 0 | T | A | 31.8% | 25.5 / 19.3 | 22 | noncoding (84/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| * | NC_000913_3_pae_pgi | 3,941,892 | 0 | T | A | 27.3% | 32.2 / 15.6 | 22 | noncoding (85/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| * | NC_000913_3_pae_pgi | 526,796 | 0 | C | G | 24.1% | 360.6 / 127.7 | 162 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 4,295,320 | 0 | C | T | 24.0% | 329.4 / 94.9 | 180 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_pae_pgi | 526,800 | 0 | A | G | 23.2% | 312.7 / 85.8 | 155 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,792 | 0 | A | C | 23.2% | 314.2 / 116.0 | 166 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 315 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 16507 | NA (NA) | 23 (0.170) | 19/246 | 11.7 | NA | coding (1063/1113 nt) | insL1 | IS186 transposase |
| ? | NC_000913_3_pae_pgi | = 16511 | NA (NA) | coding (1067/1113 nt) | insL1 | IS186 transposase | |||||
| * | ? | NC_000913_3_pae_pgi | = 715221 | 165 (1.170) | 19 (0.150) | 18/240 | 11.8 | 11.3% | intergenic (+23/‑191) | pgm/ybfP | phosphoglucomutase/lipoprotein |
| ? | NC_000913_3_pae_pgi | = 715231 | 148 (1.150) | intergenic (+33/‑181) | pgm/ybfP | phosphoglucomutase/lipoprotein | |||||
| * | ? | NC_000913_3_pae_pgi | 4040733 = | 113 (0.800) | 26 (0.200) | 18/244 | 12.0 | 20.9% | intergenic (+97/+173) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_pgi | 4171848 = | 91 (0.690) | intergenic (+92/‑209) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_pae_pgi | 4040719 = | 120 (0.850) | 27 (0.210) | 18/244 | 12.0 | 20.2% | intergenic (+83/+187) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_pgi | 4040742 = | 101 (0.770) | intergenic (+106/+164) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_pae_pgi | 3423376 = | 147 (1.040) | 17 (0.140) | 17/234 | 12.0 | 11.8% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_pgi | 3423420 = | 124 (0.980) | intergenic (+226/+3) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913_3_pae_pgi | = 3423340 | 142 (1.010) | 26 (0.200) | 18/244 | 12.0 | 18.2% | intergenic (+146/+83) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_pgi | 4040742 = | 101 (0.770) | intergenic (+106/+164) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_pae_pgi | = 3946688 | 138 (0.980) | 24 (0.180) | 18/250 | 12.3 | 15.4% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_pae_pgi | = 4171601 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913_3_pae_pgi | 2726200 = | NA (NA) | 24 (0.180) | 18/250 | 12.3 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_pae_pgi | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_pae_pgi | = 228744 | 97 (0.690) | 24 (0.180) | 18/250 | 12.3 | 20.6% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_pgi | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_pae_pgi | 4171839 = | 95 (0.670) | 23 (0.180) | 17/244 | 12.5 | 20.6% | intergenic (+83/‑218) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913_3_pae_pgi | 4171862 = | 89 (0.680) | intergenic (+106/‑195) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||