mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4524799 | 130 (0.800) | 3 (0.020) | 3/258 | NT | 2.3% | coding (212/906 nt) | yjhH | putative lyase/synthase |
| ? | NC_000913 | = 4524824 | 130 (0.860) | coding (187/906 nt) | yjhH | putative lyase/synthase | |||||
| * | ? | NC_000913 | = 3584195 | NA (NA) | 7 (0.040) | 3/278 | NT | 3.6% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 3966240 | 187 (1.150) | intergenic (+150/‑177) | trxA/rho | thioredoxin 1/transcription termination factor | |||||
| * | ? | NC_000913 | = 2904164 | 287 (1.760) | 5 (0.040) | 5/216 | NT | 2.3% | intergenic (+790/+583) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | NC_000913 | 2904287 = | 197 (1.560) | intergenic (+913/+460) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||
| * | ? | NC_000913 | = 2877791 | 196 (1.200) | 5 (0.040) | 5/242 | NT | 2.5% | intergenic (+173/+778) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | NC_000913 | 2878097 = | 219 (1.550) | intergenic (+479/+472) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | NC_000913 | 1570641 = | 178 (1.090) | 3 (0.020) +ATAACGTTGTAAA |
3/252 | NT | 1.5% | intergenic (‑152/+4) | gadC/gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913 | 3666120 = | 255 (1.570) | intergenic (‑310/+60) | gadX/gadA | acid resistance regulon transcriptional activator; autoactivator/glutamate decarboxylase A, PLP‑dependent | |||||
| * | ? | NC_000913 | 1460515 = | 187 (1.150) | 6 (0.040) | 3/264 | NT | 3.5% | coding (45/423 nt) | paaI | hydroxyphenylacetyl‑CoA thioesterase |
| ? | NC_000913 | 1460544 = | 156 (1.010) | coding (74/423 nt) | paaI | hydroxyphenylacetyl‑CoA thioesterase | |||||
| * | ? | NC_000913 | = 631287 | 174 (1.070) | 3 (0.020) | 3/252 | NT | 1.8% | coding (1394/2106 nt) | cstA | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| ? | NC_000913 | 631525 = | 169 (1.150) | coding (1632/2106 nt) | cstA | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein | |||||