mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 145 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4633104 | 346 (1.140) | 6 (0.020) | 4/264 | NT | 1.7% | noncoding (14/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 4633154 | 349 (1.200) | noncoding (64/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | = 4629012 | 348 (1.150) | 3 (0.010) | 3/268 | NT | 0.94% | coding (1511/1668 nt) | ettA | energy‑dependent translational throttle A |
| ? | NC_000913 | = 4629116 | 293 (1.000) | coding (1407/1668 nt) | ettA | energy‑dependent translational throttle A | |||||
| * | ? | NC_000913 | 4622077 = | 368 (1.210) | 3 (0.010) | 3/264 | NT | 0.84% | coding (309/1332 nt) | yjjJ | putative protein kinase |
| ? | NC_000913 | 4622111 = | 358 (1.240) | coding (343/1332 nt) | yjjJ | putative protein kinase | |||||
| * | ? | NC_000913 | = 4583137 | 279 (0.920) | 12 (0.040) | 8/264 | NT | 4.1% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 291 (1.000) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4534139 | 338 (1.120) | 3 (0.010) | 3/256 | NT | 0.90% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 346 (1.230) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | = 4474093 | 287 (0.950) | 5 (0.020) | 3/254 | NT | 1.8% | intergenic (‑40/‑31) | bdcA/bdcR | c‑di‑GMP‑binding biofilm dispersal mediator protein/transcriptional repressor for divergent bdcA |
| ? | NC_000913 | = 4474115 | 278 (1.000) | intergenic (‑62/‑9) | bdcA/bdcR | c‑di‑GMP‑binding biofilm dispersal mediator protein/transcriptional repressor for divergent bdcA | |||||
| * | ? | NC_000913 | = 4417460 | 329 (1.090) | 6 (0.020) | 4/262 | NT | 1.9% | coding (509/750 nt) | yjfP | acyl CoA esterase |
| ? | NC_000913 | = 4417479 | 309 (1.070) | coding (528/750 nt) | yjfP | acyl CoA esterase | |||||
| * | ? | NC_000913 | = 4373203 | 350 (1.160) | 3 (0.010) | 3/262 | NT | 0.88% | noncoding (7/99 nt) | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4373214 | 347 (1.210) | noncoding (18/99 nt) | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 4341778 = | 315 (1.040) | 5 (0.020) | 5/240 | NT | 2.0% | intergenic (‑150/‑133) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding |
| ? | NC_000913 | 4341834 = | 225 (0.850) | intergenic (‑206/‑77) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | 4321136 = | 320 (1.060) | 4 (0.010) | 3/266 | NT | 1.3% | coding (112/585 nt) | phnH | ribophosphonate triphosphate synthase subunit |
| ? | NC_000913 | 4321175 = | 292 (1.000) | coding (73/585 nt) | phnH | ribophosphonate triphosphate synthase subunit | |||||