New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2117295 =	70 (1.270)	3 (0.060)	3/242	NT	4.7%	intergenic (‑140/+73)	ssb/recT	hypothetical protein/possible recombination protein RecT
	?	CP000730	2117348 =	55 (1.050)					intergenic (‑193/+20)	ssb/recT	hypothetical protein/possible recombination protein RecT
Rejected: Frequency below/above cutoff threshold.

ATTGATGTATCTGACTTTGAAGAAATAAAAGAACCTGCAACAGAAAAAGAAAGCGAAGAAGAGCCATTTTAATTGAAACAATAGCAACTGGTTCAAGTGGTAACTGCTACGTCTTAAATGATGGACGTACTACGTTACTACTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2117439‑2117295 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acttgaACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGG  >  CP000730/2117348‑2117487                                                                                                                                                                                                                                                                                               ATTGATGTATCTGACTTTGAAGAAATAAAAGAACCTGCAACAGAAAAAGAAAGCGAAGAAGAGCCATTTTAATTGAAACAATAGCAACTGGTTCAAGTGGTAACTGCTACGTCTTAAATGATGGACGTACTACGTTACTAC                                                                                                                                                  <  1:54953/141‑1   TGATGTATCTGACTTTGAAGTAATAAAAGAACCTGCAACAGAAAAAGAAAGCGAAGAAGAGCCATTTTAATTGAAACAATAGCAACTGGTTCAAGTGGTTACTGCTACGTCTTAAATGATGGACGTACTACGTTATTACTT                                                                                                                                                <  2:315037/141‑1                                                                                                    GTAACTGCTACGTCTTAAATGATGGACGTACTACGTTACTACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGG                                               >  1:10287/1‑141                                                                                                         TGCTACGTCTTAAATGATGGACGTACTACGTTACTACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGC                                                                                                      >  1:114593/1‑81                                                                                                         TGCTACGTCTTAAATGATGGACGTACTACGTTACTACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGC                                                                                                      <  2:114593/81‑1                                                                                                                                                 AACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGG  <  2:398491/141‑1                                                                                                                                                                                                                                                                                               ATTGATGTATCTGACTTTGAAGAAATAAAAGAACCTGCAACAGAAAAAGAAAGCGAAGAAGAGCCATTTTAATTGAAACAATAGCAACTGGTTCAAGTGGTAACTGCTACGTCTTAAATGATGGACGTACTACGTTACTACTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2117439‑2117295 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acttgaACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACATCAATAGGCTTATCATTTTCTAATTCTGTGTATTGTGCTTCTTCAAGAACTGG  >  CP000730/2117348‑2117487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.