New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2117295 =	70 (1.270)	3 (0.060)	3/242	NT	4.7%	intergenic (‑140/+73)	ssb/recT	hypothetical protein/possible recombination protein RecT
	?	CP000730	2117348 =	55 (1.050)					intergenic (‑193/+20)	ssb/recT	hypothetical protein/possible recombination protein RecT
Rejected: Frequency below/above cutoff threshold.

TATAGCTGATTACACCATTGTCGACAAACTGCTTTGTATACTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACA  >  CP000730/2117155‑2117434                                                                                                                                             |                                                                                                                                            ccagttcttgaagaagcacaatacacagaattagaaaatgataagcctattgatgtatctgactttgaagaaataaaagaacctgcaacagaaaaagaaagcgaagaagagccattttaattgaaacaatagcaactggtt                                                                                                                                             <  2:398491‑M1/1‑1 (MQ=255)      cTGATTACACCATTGTCGACAAACTGCTTTGTATACTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTGAAATTTTATACCTGCCTCAagt                                                                                                                                        <  2:693829/141‑1 (MQ=255)        gATTACACCATTGTCGACAAACTGCTTTGTATACTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGACCACGTTCAACTTTTATACCTGCCTCAagtag                                                                                                                                      <  2:392851/141‑1 (MQ=255)             cacCATTGTCGACAAACTGCTTTGTATACTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACg                                                                                                                                 <  2:549756/141‑1 (MQ=255)              acCATTGTCGACAAACTGCTTTGTATACTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACgt                                                                                                                                <  1:347222/141‑1 (MQ=255)                 aTTGTCGACAAACTGCTTTGTATACTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACgtagt                                                                                                                             <  1:269863/141‑1 (MQ=255)                 aTTGTCGACAAACTGCTTTGTATACTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACgtagt                                                                                                                             >  2:177555/1‑141 (MQ=255)                    gTCGACAAACTGCTTTGTATACTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACg                                                                                                                          >  2:55458/1‑141 (MQ=255)                         cAAACTGCTTTGTATACTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTAccatagc                                                                                                                     >  2:440793/1‑135 (MQ=255)                         cAAACTGCTTTGTATACTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCcat                                                                                                                     >  2:601800/1‑141 (MQ=255)                          aaaCTGCTTTGTATACTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCcatc                                                                                                                    >  1:465421/1‑141 (MQ=255)                              tGCTTTGTATACTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCAttt                                                                                                                >  1:398491/1‑141 (MQ=255)                                cTTTGTATACTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTaa                                                                                                              >  2:377188/1‑141 (MQ=255)                                cTTTGTATACTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTaa                                                                                                              >  2:377243/1‑141 (MQ=255)                                     tataCTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACCCGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCCTAATTTAAGACGt                                                                                                         >  2:515882/1‑141 (MQ=255)                                       taCTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAg                                                                                                       >  1:410185/1‑141 (MQ=255)                                        aCTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGc                                                                                                      <  2:132824/141‑1 (MQ=255)                                         cTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCa                                                                                                     >  1:222861/1‑141 (MQ=255)                                          tttGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAg                                                                                                    >  1:88319/1‑141 (MQ=255)                                           ttGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGt                                                                                                   <  2:7260/141‑1 (MQ=255)                                           ttGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGt                                                                                                   <  1:55458/141‑1 (MQ=255)                                             gCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTa                                                                                                 <  1:177555/141‑1 (MQ=255)                                              cctattgatgtatctgactttgaagaaataaaagaacctgcaacagaaaaagaaagcgaagaagagccattttaattgaaacaatagcaactggtTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTAc                                                                                                >  1:10287‑M1/96‑141 (MQ=255)                                              cATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTAc                                                                                                >  1:504705/1‑141 (MQ=255)                                                  aTCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACt                                                                                            >  2:693798/1‑141 (MQ=255)                                                   tCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACtt                                                                                           >  2:61890/1‑141 (MQ=255)                                                       cATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAAc                                                                                       <  1:377188/141‑1 (MQ=255)                                                       cATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAAc                                                                                       <  1:377243/141‑1 (MQ=255)                                                        aTGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAAcc                                                                                      <  2:203453/141‑1 (MQ=255)                                                          gTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAg                                                                                    >  2:231855/1‑141 (MQ=255)                                                          gTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAg                                                                                    >  1:257892/1‑141 (MQ=255)                                                           ttCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGt                                                                                   <  2:641334/141‑1 (MQ=255)                                                               tgtgtgATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCt                                                                               <  2:507201/141‑1 (MQ=255)                                                                gtgtgATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTa                                                                              >  2:169117/1‑141 (MQ=255)                                                                aagtgATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTa                                                                              <  1:654063/139‑1 (MQ=255)                                                                   tgATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACt                                                                                            <  1:49518/124‑1 (MQ=255)                                                                   tgATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACt                                                                                            >  2:49518/1‑124 (MQ=255)                                                                        aGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTAGCTATTGTTTCa                                                                      >  2:570555/1‑141 (MQ=255)                                                                         gACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCaa                                                                     <  1:477749/141‑1 (MQ=255)                                                                          acacCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAAt                                                                    >  1:674591/1‑141 (MQ=255)                                                                             cccTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCAc                                                                                             <  1:662335/113‑1 (MQ=255)                                                                             cccTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCAc                                                                                             >  2:662335/1‑113 (MQ=255)                                                                             cccTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTaa                                                                 >  2:58343/1‑141 (MQ=255)                                                                             cccTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTaa                                                                 >  2:475916/1‑141 (MQ=255)                                                                             cccTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTaa                                                                 >  1:612213/1‑141 (MQ=255)                                                                                tGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAAt                                                              >  1:161990/1‑141 (MQ=255)                                                                                  cTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATgg                                                            >  1:615017/1‑141 (MQ=255)                                                                                      atGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGctct                                                        >  2:392180/1‑141 (MQ=255)                                                                                        gTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCtcttc                                                      >  1:200302/1‑141 (MQ=255)                                                                                         tCTTGTTTTATATTTGAAATGCGTTTGAACACGTTCAAATTTTATACCTGCCTCAAATAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCtcttct                                                     >  2:695025/1‑141 (MQ=255)                                                                                               tttATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGctt                                               <  2:304335/141‑1 (MQ=255)                                                                                                   tatTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGctttctt                                           <  1:61890/141‑1 (MQ=255)                                                                                                    atTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGctttcttt                                          >  2:542960/1‑141 (MQ=255)                                                                                                     gcgaagaagagccattttaattgaaacaatagcaactggtTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCa                                                                                                     <  2:114593‑M1/41‑1 (MQ=255)                                                                                                     gcgaagaagagccattttaattgaaacaatagcaactggtTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCa                                                                                                     >  1:114593‑M1/41‑81 (MQ=255)                                                                                                             gCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGTACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGc                                 <  1:493605/141‑1 (MQ=255)                                                                                                             gCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGc                                 >  2:562358/1‑141 (MQ=255)                                                                                                             gCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGc                                 >  2:226482/1‑141 (MQ=255)                                                                                                              cTTTTGAACACGTCCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCa                                >  1:522176/1‑141 (MQ=255)                                                                                                               ttttGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAg                               <  2:575264/141‑1 (MQ=255)                                                                                                                 ttGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGt                             >  2:574347/1‑141 (MQ=255)                                                                                                                  tGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGtt                            >  1:312279/1‑141 (MQ=255)                                                                                                                    aaCACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCt                          <  1:317853/141‑1 (MQ=255)                                                                                                                        cGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTa                      >  1:435284/1‑141 (MQ=255)                                                                                                                        cGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTa                      >  1:80740/1‑141 (MQ=255)                                                                                                                         gtgcAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTAt                     <  2:612213/138‑1 (MQ=255)                                                                                                                         gTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTAt                     <  2:200302/141‑1 (MQ=255)                                                                                                                         gTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTAt                     <  1:326890/141‑1 (MQ=255)                                                                                                                          ttCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTAtt                    >  1:499797/1‑141 (MQ=255)                                                                                                                              aaTTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTATttctt                >  1:353656/1‑141 (MQ=255)                                                                                                                               aTTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTATttcttc               <  1:492245/141‑1 (MQ=255)                                                                                                                                  ttATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCaaa            >  2:1966/1‑141 (MQ=255)                                                                                                                                   tataCCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAg           >  1:77502/1‑141 (MQ=255)                                                                                                                                       ccTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTTTGTTGTAGGTTTTTTTATTTCTTTAAAGTCaa       >  2:386358/1‑140 (MQ=255)                                                                                                                                          gCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATa    <  2:690459/141‑1 (MQ=255)                                                                                                                                           ccTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATAc   <  2:304373/141‑1 (MQ=255)                                                                                                                                            cTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACa  <  2:6782/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                            TATAGCTGATTACACCATTGTCGACAAACTGCTTTGTATACTTTGCATGATCACCATGTTCGTGTGTGATAAGACACCCTGCTATATGTCTTGTTTTATATTTGAAATGCTTTTGAACACGTTCAAATTTTATACCTGCCTCAAGTAGTAACGTAGTACGTCCATCATTTAAGACGTAGCAGTTACCACTTGAACCAGTTGCTATTGTTTCAATTAAAATGGCTCTTCTTCGCTTTCTTTTTCTGTTGCAGGTTCTTTTATTTCTTCAAAGTCAGATACA  >  CP000730/2117155‑2117434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.