New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	468257 =	94 (1.330)	3 (0.050)	3/246	10.6	3.4%	coding (638/792 nt)	USA300HOU_0443	hypothetical lipoprotein
	?	CP000730	468356 =	86 (1.340)					coding (737/792 nt)	USA300HOU_0443	hypothetical lipoprotein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTACTTGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGTTGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/468407‑468257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttgttgaaaGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGTGTTTTCA  >  CP000730/468356‑468494                                                                                                                                                                                                                                                                                                    TTACTTGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCT                                                                                                                                                       <  1:616753/141‑1   ACTTGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTT                                                                                                                                                     >  1:26277/1‑141     TTGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTG                                                                                                                                                   >  1:368258/1‑141      TGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATTTCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGT                                                                                                                                                  <  1:357474/141‑1      TGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGT                                                                                                                                                  <  2:751942/141‑1      TGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGT                                                                                                                                                  <  1:668706/141‑1       GGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGTT                                                                                                                                                 <  1:800749/141‑1                                                      TTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGTTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCAT                                                                                                  >  2:294175/1‑141                                                        CAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGTTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATAC                                                                                                >  1:804282/1‑141                                                             AAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGTTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGT                                                                                           >  2:560479/1‑141                                                                                                                                              gTTGTTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATAAAAAATAAAAAAATGTGCAAAGAGATGTGACAAGATGAAG          <  2:259624/140‑1                                                                                                                                              TTTGTTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGATAAATTAAAATGTGTGGTTAGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAG          <  2:508921/141‑1                                                                                                                                               TTGTTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGT         <  1:226241/141‑1                                                                                                                                                 GTTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGTGT       >  1:279199/1‑141                                                                                                                                                  TTGAAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGTGTT      >  2:576418/1‑141                                                                                                                                                     AAAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATCGAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGTGTTTTC   <  2:799472/141‑1                                                                                                                                                      AAGAAAAGGTGAGAATATTTATTTTACCGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTCGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGTGTTTTCA  <  2:79970/141‑1                                                                                                                                                      AAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGTGTTTTCA  >  1:524345/1‑141                                                                                                                                                      AAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGAT                                                           <  1:516454/84‑1                                                                                                                                                      AAGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGAT                                                           >  2:516454/1‑84                                                                                                                                                                                                                                                                                                    TTACTTGGTATGAATTCAACACTATCGTTAAAATAAATATTCTCACCTTTTCTTTCAACAAAAGTAAATTCAATATCGTTTTGACCAACTGAGGAATTTTTTAAATCTCCTCCACCTTTCAAAAGTAACTTCGGTGTTTCTTTTGTTGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/468407‑468257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttgttgaaaGAAAAGGTGAGAATATTTATTTTAACGATAGTGTTGAATTCATACCAAGTAAGTAAAGTTAAATTAAAATGTGTGGTTAGATGAAATGATCAAATATCAAAAAATGTGCAAAGAGATGTGACAAGATGAAGTGTTTTCA  >  CP000730/468356‑468494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.