| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1873411 = | 100 (1.410) | 3 (0.050) | 3/244 | 10.5 | 3.5% | intergenic (‑87/+663) | USA300HOU_1742/USA300HOU_1743 | M20 family peptidase/hypothetical protein |
| ? | CP000730 | 1873475 = | 73 (1.140) | intergenic (‑151/+599) | USA300HOU_1742/USA300HOU_1743 | M20 family peptidase/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTAATTACTGTCAATATTAAATTGTGTGCCTAGTACATTGACTTATATCTCGAGCTCTTGAATATGTGTATTTTAAATATATAAATTAAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1873562‑1873411‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgttcctttttTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAAT > CP000730/1873475‑1873614 TTAATTACTGTCAATATTAAATTGTGTGCCTAGTACATTGACTTATATCTCGAGCTCTTGAATATGTGTATTTTAAATATATAAATTAAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTT < 2:383281/141‑1 ATTACTGTCAATATTAAATTGTGTGCCTAGTACATTGACTTATATCTCGAGCTCTTGAATATGTGTATTTTAAATATATAAATTAAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGT < 1:802206/141‑1 ATTACTGTCAATATTAAATTGTGTGCCTAGTACATTGACTTATATCTCGAGCTCTTGAATATGTGTATTTTAAATATATAAATTAAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGT < 2:36583/141‑1 TGTCAATATTAAATTGTGTGCCTAGTACATTGACTTATATCTCGAGCTCTTGAATATGTGTATTTTAAATATATAAATTAAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTT > 1:298363/1‑141 TAAATTAAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTTAATTTATATATTTAAAATACACCTATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTT > 2:862/1‑141 AGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATT > 1:57490/1‑129 AGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATT < 2:57490/129‑1 GTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCG < 1:653044/141‑1 TCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAA < 1:195146/141‑1 CCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAA < 1:18832/141‑1 CCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAA > 2:579189/1‑141 CTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCACTGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGCACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCttttc < 1:382650/141‑6 TTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCttttcga < 1:134505/141‑8 TTTAATTTATATATTTAAAATACACAGATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATGTAATATTGACAGTAATTAACCTAACGAATAGGCGCCCCGGTGCCCCTACATAGCGACTTACGAAAAGAAA < 2:389077/141‑1 TTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAAT < 1:806074/141‑1 TTAATTACTGTCAATATTAAATTGTGTGCCTAGTACATTGACTTATATCTCGAGCTCTTGAATATGTGTATTTTAAATATATAAATTAAAAAAGGAACAAAGCAGCTATTTATGATTTGTGTCATATCAATAGCATCGTTTTGTTCCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1873562‑1873411‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgttcctttttTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTCGAAAAGAAAT > CP000730/1873475‑1873614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |