| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2476442 = | 67 (0.950) | 4 (0.060) | 4/246 | 9.9 | 6.2% | intergenic (‑187/+53) | tcaA/tcaR | teicoplanin resistance protein TcaA/transcriptional regulator TcaR |
| ? | CP000730 | 2476489 = | 61 (0.950) | intergenic (‑234/+6) | tcaA/tcaR | teicoplanin resistance protein TcaA/transcriptional regulator TcaR | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATATTACTAATGATTTAAATTCTGAAGATATTGAAAATGTAAGGCAAGTATTAGAAGTCATCAATCATCGCATTAAAACATATAGCAATCATAAATAGGTTTTTGAAGGTGTTCAAATATAAGACTAAATATGTATGTATTGAACACCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2476593‑2476442‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgaacaccttcAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATCTTGCGCAATATCTGTCATAATCGCATTACGTTCT > CP000730/2476489‑2476627 GATATTACTAATGATTTAAATTCTGAAGATATTGAAAATGTAAGGCAAGTATTAGAAGTCATCAATCATCGCATTAAAACATATAGCAATCATAAATAGGTTTTTGAAGGTGTTCAAATATAAGACTAAATATGTATGTAT < 1:342381/141‑1 TATTACTAATTATTTAAATTCTGAAGATATTGAAAATGTAAGGCAAGTATTAGAAGTCATCAATCATCGCATTAAAACATATAGCAATCATAAATAGGTTTTTGAAGGTGTTCAAATATAAGACTAAATATGTATGTATTG < 1:812208/141‑1 TAATGATTTAAATTCTGAAGATATTGAAAATGTAAGGCAAGTATTAGAAGTCATCAATCATCGCATTAAAACATATAGCAATCATAAATTGGTTTTTGAAGGTGTTCTATTATAAGACTATATATGTATGTATTGAACACC < 2:682006/141‑1 TAATGATTTAAATTCTGAAGATATTGAAAATGTAAGGCAAGTATTAGAAGTCATCAATCATCGCATTAAAACATATAGCAATCATAAATAGGTTTTTGAAGGTGTTCAAATATAAGACTAAATATGTATGTATTGAACACC < 1:179627/141‑1 AATGATTTAAATTCTGAAGATATTGAAAATGTAAGGCAAGTATTAGAAGTCATCAATCATCGCATTAAAACATATAGCAATCATAAATAGGTTTTTGAAGGTGTTCAAATATAAGACTAAATATGTATGTATTGAACACCT > 1:383420/1‑141 TTTTTGAAGGTGTTCAAATATAAGACTAAATATGTATGTATTG > 2:178796/1‑43 TTTTTGAAGGTGTTCAAATATAAGACTAAATATGTATGTATTG < 1:178796/43‑1 GGTGTTCAAATATAAGACTAAATATGTATGTATTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTA > 1:426683/1‑141 CAAATATAAGACTAAATATGTATGTATTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATA > 2:52771/1‑141 AAATATAAGACTAAATATGTATGTATTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGAT < 2:181772/82‑1 AAATATAAGACTAAATATGTATGTATTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGAT > 1:181772/1‑82 tcTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATCTTGCGCAATATCTGTCATAATCG < 1:327345/139‑1 AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATCTTGCGCAATATCTGTCATAATCGCATT < 2:474497/141‑1 AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATCTTGCGCAATATCCGTCATAATCGCATT > 2:486024/1‑141 AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATCATGCGCAATATCTGTCATAATCGCATT > 1:144380/1‑141 ACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATCTTGCGCAATATCTGTCATAATCGCATTA < 1:396779/141‑1 CCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATCTTGCGCAATATCTGTCATAATCGCATTACGT < 2:178388/141‑1 CCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATCTTGCGCAATATCTGTCATAATCGCATTACGT < 1:726785/141‑1 CCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATCTTGCGCAATATCTGTCATAATCGCATTACGT < 1:445253/141‑1 CCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATCTTGCGCAATATCTGTCATAATCGCATTACGT < 2:653864/141‑1 CCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATCTTGCGCAATATCTGTCATAATCGCATTACGT > 2:572690/1‑141 TTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATCTTGCGCAATATCTGTCATAATCGCATTACGTTt > 2:632288/1‑140 TTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATCTTGCGCAATATCTGTCATAATCGCATTACGTTC > 1:735824/1‑141 TCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATCTTGCGCAATATCTGTCATAATCGCATTACGTTCT < 2:240931/141‑1 GATATTACTAATGATTTAAATTCTGAAGATATTGAAAATGTAAGGCAAGTATTAGAAGTCATCAATCATCGCATTAAAACATATAGCAATCATAAATAGGTTTTTGAAGGTGTTCAAATATAAGACTAAATATGTATGTATTGAACACCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2476593‑2476442‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgaacaccttcAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATCTTGCGCAATATCTGTCATAATCGCATTACGTTCT > CP000730/2476489‑2476627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |