New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2476442 =	67 (0.950)	4 (0.060)	4/246	9.9	6.2%	intergenic (‑187/+53)	tcaA/tcaR	teicoplanin resistance protein TcaA/transcriptional regulator TcaR
	?	CP000730	2476489 =	61 (0.950)					intergenic (‑234/+6)	tcaA/tcaR	teicoplanin resistance protein TcaA/transcriptional regulator TcaR
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAA  >  CP000730/2476302‑2476578                                                                                                                                             |                                                                                                                                         caAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAaag                                                                                                                                          >  1:364266/1‑141 (MQ=255)  aaaaaTTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAaaga                                                                                                                                         >  1:363077/1‑141 (MQ=255)     aaTTATTNCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAgg                                                                                                                                      <  2:636432/141‑1 (MQ=255)         attTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGtt                                                                                                                                  >  1:609434/1‑141 (MQ=255)            tCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCaa                                                                                                                               <  2:485094/141‑1 (MQ=255)                  ttttACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAatacata                                                                                                                         >  2:686164/1‑141 (MQ=255)                    ttACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAAtacataca                                                                                                                       >  1:240629/1‑141 (MQ=255)                      aCCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATAcatacata                                                                                                                     >  2:445253/1‑141 (MQ=255)                       ccATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACGTTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACatat                                                                                                                    >  1:653864/1‑141 (MQ=255)                       ccATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACatat                                                                                                                    <  2:485563/141‑1 (MQ=255)                        cATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATAtt                                                                                                                   <  1:808312/141‑1 (MQ=255)                          ttattattTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTa                                                                                                                 >  1:673727/1‑141 (MQ=255)                            attattTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGt                                                                                                               <  2:695414/141‑1 (MQ=255)                                ttttACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTta                                                                                                           <  2:364266/141‑1 (MQ=255)                                  ttACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATAAATATTTAGTCTtata                                                                                                         >  2:585295/1‑141 (MQ=255)                                   tACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTatat                                                                                                        >  1:573662/1‑141 (MQ=255)                                     cAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATAttt                                                                                                      <  1:4794/141‑1 (MQ=255)                                          attatCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAaca                                                                                                 >  1:511811/1‑141 (MQ=255)                                            tatCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACAcc                                                                                               <  1:485740/141‑1 (MQ=255)                                               cccAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTc                                                                                            >  1:340444/1‑141 (MQ=255)                                                      aTACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAAcc                                                                                     <  2:47801/141‑1 (MQ=255)                                                        aCAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTa                                                                                   <  1:730508/141‑1 (MQ=255)                                                         cAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTAt                                                                                  >  2:817841/1‑141 (MQ=255)                                                          aaTTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTAtt                                                                                 <  2:759543/141‑1 (MQ=255)                                                              cAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATg                                                                             <  2:375976/141‑1 (MQ=255)                                                                aGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGAt                                                                           >  1:10530/1‑141 (MQ=255)                                                                 gAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTta                                                                                                           <  2:449261/108‑1 (MQ=255)                                                                 gAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTta                                                                                                           >  1:449261/1‑108 (MQ=255)                                                                  aaaTGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTg                                                                         <  1:253999/141‑1 (MQ=255)                                                                   aaTGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGc                                                                        <  1:729567/141‑1 (MQ=255)                                                                    aTGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCt                                                                       <  1:687599/141‑1 (MQ=255)                                                                    aTGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCt                                                                       <  2:19580/141‑1 (MQ=255)                                                                     tGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCta                                                                      >  2:590575/1‑141 (MQ=255)                                                                     tGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCta                                                                      >  2:344976/1‑141 (MQ=255)                                                                     tGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAAATTATTTATGATTGAta                                                                      >  1:810027/1‑141 (MQ=255)                                                                      gATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCtat                                                                     <  1:102744/141‑1 (MQ=255)                                                                       aTTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCtata                                                                    <  1:732343/141‑1 (MQ=255)                                                                        ttAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACAGCTTCAAAAACCTATTTATGATTGCTatat                                                                   >  1:52448/1‑141 (MQ=255)                                                                        ttAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTatat                                                                   >  2:383420/1‑141 (MQ=255)                                                                         tAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATg                                                                  >  1:232985/1‑141 (MQ=255)                                                                              ttactttaGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTCTATGTTTTa                                                             <  2:174574/141‑1 (MQ=255)                                                                                 ctttaGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAAtt                                                          >  1:568871/1‑140 (MQ=255)                                                                                   ttaGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCg                                                        >  1:192716/1‑141 (MQ=255)                                                                                         ttGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGAtgatt                                                  <  1:652143/141‑1 (MQ=255)                                                                                         ttGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGAtgatt                                                  <  2:573662/141‑1 (MQ=255)                                                                                           gTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGAtgattga                                                >  1:11997/1‑141 (MQ=255)                                                                                            tACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTTTATGTTTTAATGCGAtgattgat                                               >  2:540077/1‑141 (MQ=255)                                                                                                ttattaCATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATCTATGATTGCTATATGTTTTAATGCGATGATTGATGACt                                           >  1:500916/1‑141 (MQ=255)                                                                                                   ttaCATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCt                                        <  1:810360/141‑1 (MQ=255)                                                                                                         tatttatGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACt                                  >  2:629540/1‑141 (MQ=255)                                                                                                          atttatGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATTCGATGATTGATGACTTCTAATACtt                                 >  2:726785/1‑141 (MQ=255)                                                                                                          atttatGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACtt                                 <  2:807383/141‑1 (MQ=255)                                                                                                            ttatGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGc                               <  1:371046/141‑1 (MQ=255)                                                                                                              atGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCt                             <  1:597706/141‑1 (MQ=255)                                                                                                               tGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCtt                            <  1:649760/141‑1 (MQ=255)                                                                                                                gAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATTACTTCTAATACTTGCCTTa                           >  1:701483/1‑141 (MQ=255)                                                                                                                  aaGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACa                         >  1:6369/1‑141 (MQ=255)                                                                                                                      aCTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACAtttt                     <  1:817841/141‑1 (MQ=255)                                                                                                                        tctctcAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCa                   <  1:262294/141‑1 (MQ=255)                                                                                                                          tctcAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAat                 <  1:696867/141‑1 (MQ=255)                                                                                                                                ttATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTc           <  1:265664/141‑1 (MQ=255)                                                                                                                                   taACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGa        >  1:843451/1‑141 (MQ=255)                                                                                                                                    aaCTAAAAAGAAGGTGTTCAAAACATTCATAGTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCtttataa       >  2:464737/1‑136 (MQ=255)                                                                                                                                      cTAAAAAGAAGGTGTTCAATACTTACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGTTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACACATTCAATATCTTCAGAAtt     <  2:246783/141‑1 (MQ=255)                                                                                                                                      cTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAAtt     >  2:792070/1‑141 (MQ=255)                                                                                                                                       tAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAAttt    <  2:240629/141‑1 (MQ=255)                                                                                                                                         aaaaGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTaa  >  2:401495/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                         CAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAA  >  CP000730/2476302‑2476578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.