| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2753848 | 127 (1.170) | 7 (0.090) +ATACTTATAAAATTCAAAATCTTATGCATCATTA |
7/200 | 11.2 | 7.2% | intergenic (+129/+59) | USA300HOU_2608/USA300HOU_2609 | possible transcriptional regulator/possible metallo‑beta‑lactamase |
| ? | CP000730 | 2754851 = | 117 (1.070) | intergenic (‑258/+6) | USA300HOU_2609/betT | possible metallo‑beta‑lactamase/BCCT family betaine/carnitine/choline transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTGACTCAAACAACGACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2753721‑2753848‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGAATTATAAATTATCGTCTTGTTCTTCTTCTGATACTTGAACGATTCGCAATGAACGACGTTCAACTTCTTTTAATTTTTCAGCACGCGTTTCAAGTTTAATTCTATCGCGCCCTAAAATGATTAAAAA > CP000730/2754851‑2754982 |||||||||||||||||||||||||||||||||| ttagcctcggACAGCGGCAATGATGATTATGCATGATGAAAACAATACAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATATACTTATAAAAT < 2:577909/131‑1 cagcggCAATGATGATTATGCATGATGAAAACAATACAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATATACTTATAAAATTCAAAATCTTA > 1:319972/7‑141 ATGCATGATGAAAACAATACAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATATACTTATAAAATTCAAAATCTTATGCATCATTATTTGAAT < 2:319972/141‑1 CCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATATACTTATAAAATTCAAAATCTTATGCATCATTATTTGAATTATAAATTATCGTCTTGTTCTTCTTCT < 1:4731/141‑1 AACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTATTGTTTTATATGACAATCAATTATATACTTATAAAATTCAAAATCTTATGCATCATTATTTGAATTATAAATTATCGTCTTGTTCTTCTTCTGATACTTGAA > 2:213783/1‑141 TCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATATACTTATAAAATTCAAAATCTTATGCATCATTATTTGAATTATAAATTATCGTCTTGTTCTTCTTCTGATACTTGAACGATTCGCAATGAACG > 2:282713/1‑141 AGAAATTACCGTTTTTGTTTTATATGACAATCAATTATATACTTATAAAATTCAAAATCTTATGCATCATTATTTGAATTATAAATTATCGTCTTGTTCTTCTTCTGATACTTGAACGATTCGCAATGAACGACGTTCAAC > 1:375957/1‑141 TTACCGTTTTTTTTTTTTTTTTCAATCAAATATATACTTATAAAATTCAAAATCTTATGCATCATTATTTGAATTATAAATTATCGTCTTGTTCTTCTTCTGATACTTGAACGATTCGCAATGAACGACGTTCAACTTCTT > 2:260394/1‑141 CAATCAATTATATACTTATAAAATTCAAAATCTTATGCATCATTATTTGAATTATAAATTATCGTCTTGTTCTTCTTCTGATACTTGAACGATTCGCCATGAACGACGTTCAACTTCTTTTAATTTTTCAGCACGCGTTTC < 2:830875/141‑1 TCTTATGCATCATTATTTGAATTATAAATTATCGTCTTGTTCTTCTTCTGATACTTGAACGATTCGCAATGAACGACGTTCAACTTCTTTTAATTTTTCAGCACGCGTTTCAAGTTTAATTCTATCGCGCCCTAAAATGAT > 1:727357/1‑141 GCATCATTATTTGAATTATAAATTATCGTCTTGTTCTTCTTCTGATACTTGAACGATTCGCAATGAACGACGTTCAACTTCTTTTAATTTTTCAGCACGCGTTTCAAGTTTAATTCTATCGCGCCCTAAAATGATTAAAAA < 1:282713/141‑1 |||||||||||||||||||||||||||||||||| ATTGACTCAAACAACGACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2753721‑2753848‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGAATTATAAATTATCGTCTTGTTCTTCTTCTGATACTTGAACGATTCGCAATGAACGACGTTCAACTTCTTTTAATTTTTCAGCACGCGTTTCAAGTTTAATTCTATCGCGCCCTAAAATGATTAAAAA > CP000730/2754851‑2754982 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |