New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 2753848127 (1.170)7 (0.090)
+ATACTTATAAAATTCAAAATCTTATGCATCATTA		 7/200 11.2 7.2% intergenic (+129/+59) USA300HOU_2608/USA300HOU_2609 possible transcriptional regulator/possible metallo‑beta‑lactamase
?CP000730 2754851 = 117 (1.070)intergenic (‑258/+6) USA300HOU_2609/betT possible metallo‑beta‑lactamase/BCCT family betaine/carnitine/choline transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 128 total aligned reads displayed.

TCTGAAAATTAAAATTGACTCAAACAACGACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACGTTTTTCATATTCATTTTCTACAAAATAA  >  CP000730/2753708‑2753988
                                                                                                                                            |                                                                                                                                            
tctgaAAATTAAAATTGACTCAAACAACGACAATGATGATTATGCATGATAAAAACAATGCAATAGGACCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTAt                                                                                                                                              >  1:1386238/1‑141 (MQ=255)
       attaaaattGACTCAAACAACGACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTa                                                                                                                                       <  2:273074/141‑1 (MQ=255)
           aaattGACTCAAACAACGACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTAtttt                                                                                                                                   >  1:108334/1‑141 (MQ=255)
           aaattGACTCAAACAACGACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATAGAGGTAtttt                                                                                                                                   >  1:1094828/1‑141 (MQ=255)
             attGACTCAAACAACGACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGCAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCt                                                                                                                                 >  2:1903/1‑141 (MQ=255)
              ttGACTCAAACAACGACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTa                                                                                                                                <  2:1237936/141‑1 (MQ=255)
              ttGACTCAAACAACGACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTa                                                                                                                                >  2:38550/1‑141 (MQ=255)
               tGACTCAAACAACGACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAg                                                                                                                               <  1:1220584/141‑1 (MQ=255)
               tGACTCAAACAACGACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAg                                                                                                                               <  1:1076845/141‑1 (MQ=255)
               tGACTCAAACAACGACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAg                                                                                                                               <  2:950839/141‑1 (MQ=255)
                 aCTCAAACAACGACAATGATGATTATGTATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAggg                                                                                                                             >  2:925319/1‑141 (MQ=255)
                  cTCCAACAACGACAATGAGTATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGGATTTTCTTGGGc                                                                                                                            <  2:68133/141‑1 (MQ=255)
                     aaaCAACGACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCttt                                                                                                                         <  2:1086522/141‑1 (MQ=255)
                      aacaacGACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTc                                                                                                                        <  2:1004344/141‑1 (MQ=255)
                            gACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGAt                                                                                                                  >  1:1349396/1‑141 (MQ=255)
                            gACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGAAGGTATTTTCTAGGGCTTTCTTAGAt                                                                                                                  >  2:1099577/1‑141 (MQ=255)
                              cAATGATGCTTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCCATCTCAATAAATAGAAATTACCGTTTTCGTTTTATATGACAATCAACCCTGAAGGTCTTTTCTAGGGCTTTcnccgcttc                                                                                                                >  2:1038117/1‑133 (MQ=255)
                              cAATGATGATTATGCATGATAAAAACACTGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTc                                                                                                                >  1:1352038/1‑141 (MQ=255)
                              cAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTc                                                                                                                >  2:933293/1‑141 (MQ=255)
                              cAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTc                                                                                                                >  2:885181/1‑141 (MQ=255)
                              cAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACAGTTTTTGTTTTATATGACAATCATATATGGATATATTTATTAGGGCTTTCTTAGATTc                                                                                                                >  1:50953/1‑141 (MQ=255)
                                  gatgatTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTa                                                                                                            >  2:156915/1‑141 (MQ=255)
                                  gatgatTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCCCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTATATTCGTTa                                                                                                            >  1:807234/1‑141 (MQ=255)
                                       ttATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTg                                                                                                       >  1:272391/1‑141 (MQ=255)
                                        tATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGc                                                                                                      <  1:439803/141‑1 (MQ=255)
                                          tGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCtt                                                                                                    >  1:1152606/1‑141 (MQ=255)
                                          tGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCtt                                                                                                    >  1:500808/1‑141 (MQ=255)
                                              tGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGcc                                                                                                <  2:1375409/141‑1 (MQ=255)
                                                aTAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCaa                                                                                              <  2:361194/141‑1 (MQ=255)
                                                 tAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAat                                                                                             <  1:1046791/141‑1 (MQ=255)
                                                    aaaCAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGcc                                                                                                <  2:457407/135‑1 (MQ=255)
                                                    aaaCAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGcc                                                                                                >  1:457407/1‑135 (MQ=255)
                                                    aaaCAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAatata                                                                                          >  1:634767/1‑141 (MQ=255)
                                                    aaaCAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAatata                                                                                          >  1:460628/1‑141 (MQ=255)
                                                    aaaCAACGCAATCGCTCCCAGCAATAAACGGTAAGTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAatata                                                                                          >  2:353175/1‑141 (MQ=255)
                                                     aaCAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAatatat                                                                                         <  1:1359216/141‑1 (MQ=255)
                                                      aCAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATAtt                                                                                        <  2:965889/141‑1 (MQ=255)
                                                      aCAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATAtt                                                                                        <  1:925319/141‑1 (MQ=255)
                                                      aCAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATAtt                                                                                        >  2:297896/1‑141 (MQ=255)
                                                      aCAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATAtt                                                                                        <  1:351590/141‑1 (MQ=255)
                                                        aaTGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTGGATTCGTACCATTGCTTCGCCATTATATTTc                                                                                      >  1:1305275/1‑141 (MQ=255)
                                                           gCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTTTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAAt                                                                                   >  2:351499/1‑141 (MQ=255)
                                                             aaTAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTa                                                                                 >  1:851185/1‑141 (MQ=255)
                                                             aaTAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTa                                                                                 >  1:1220600/1‑141 (MQ=255)
                                                                aGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCt                                                                              <  1:1319008/141‑1 (MQ=255)
                                                                 ggTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTa                                                                             >  1:510410/1‑141 (MQ=255)
                                                                   tCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTAtt                                                                           <  1:367682/141‑1 (MQ=255)
                                                                    ccACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATtc                                                                          <  2:58233/141‑1 (MQ=255)
                                                                     cACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATtct                                                                         >  2:1239628/1‑141 (MQ=255)
                                                                      aCGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATtctc                                                                        >  2:26637/1‑141 (MQ=255)
                                                                      aCGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATtctc                                                                        >  1:1124804/1‑141 (MQ=255)
                                                                       cGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCg                                                                       >  2:460089/1‑141 (MQ=255)
                                                                        gAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAat                                                                                             >  1:400870/1‑118 (MQ=255)
                                                                        gAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAat                                                                                             <  2:400870/118‑1 (MQ=255)
                                                                          aaTAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGccc                                                                    <  1:21434/141‑1 (MQ=255)
                                                                           aTAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCt                                                                   >  1:393549/1‑141 (MQ=255)
                                                                           aTAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGACAATATATTTCAATTAGCTATTCTCGCCCt                                                                   >  2:122859/1‑141 (MQ=255)
                                                                              aaCGGTAATTTCTATTTATTGAGATAGAAATTACCGTTTTTGTTTTATATGACAACCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCAc                                                                >  1:670185/1‑141 (MQ=38)
                                                                              aaCGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCAc                                                                <  1:217538/141‑1 (MQ=255)
                                                                               aCGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACg                                                               <  1:746415/141‑1 (MQ=255)
                                                                               aCGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACg                                                               <  1:1352853/141‑1 (MQ=255)
                                                                                 ggTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACAtt                                                                                                        <  1:624757/98‑1 (MQ=255)
                                                                                 ggTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACAtt                                                                                                        >  2:624757/1‑98 (MQ=255)
                                                                                  gTAATTTCTATCGCAATAAATAGAAATTACCGTTGTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTAc                                                            <  1:861883/141‑1 (MQ=255)
                                                                                   tAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTAct                                                           <  1:1187362/141‑1 (MQ=255)
                                                                                    aaTTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTActc                                                          >  1:589944/1‑141 (MQ=255)
                                                                                      tttCTATCTCAATAAATAGAAATTACAGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTa                                                        >  1:338132/1‑141 (MQ=255)
                                                                                        tCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATc                                                      >  1:526821/1‑141 (MQ=255)
                                                                                          tatttattgagataGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCaa                                                    >  1:776980/12‑141 (MQ=255)
                                                                                          tATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCaa                                                    <  1:156915/141‑1 (MQ=255)
                                                                                          tATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCaa                                                    <  2:892281/141‑1 (MQ=255)
                                                                                           aTCTCAATAAATAGAAATTACCGTTTTTGTTTTTTATTACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCaat                                                   >  2:1315740/1‑141 (MQ=255)
                                                                                              tcAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCaataat                                                <  1:1239628/141‑1 (MQ=255)
                                                                                              tcAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAACTAGCTATTCTCGCCCTCACGTACTCTATCaataat                                                <  1:1149945/141‑1 (MQ=255)
                                                                                                aataaataGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTCGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTCGTCTCTCAATAatat                                              >  2:204013/1‑141 (MQ=255)
                                                                                                aataaataGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAatat                                              <  1:750219/141‑1 (MQ=255)
                                                                                                aataaataGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAatat                                              >  1:446229/1‑141 (MQ=255)
                                                                                                    aataGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTg                                          <  2:589944/141‑1 (MQ=255)
                                                                                                      aggAAATTACCGTTTTTGTTTTACATGACCACCGAGTATGGAGGTACTTCCTGCGGCTTTCTTAGAGTCGTTACATTGCTTCGCCCATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTa                                        <  2:807234/139‑1 (MQ=255)
                                                                                                        gAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTAtt                                      >  2:558086/1‑141 (MQ=255)
                                                                                                         aaaTTACCGTTTTTTTTTTTTTTTTCAATCAAATATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTTTCAATAATATTTTGTAttt                                     >  2:346705/1‑141 (MQ=255)
                                                                                                            ttACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGtt                                  <  2:1272007/141‑1 (MQ=255)
                                                                                                             tACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTc                                 <  1:1045295/141‑1 (MQ=255)
                                                                                                              aCCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCa                                >  2:299668/1‑141 (MQ=255)
                                                                                                               ccGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCAc                               <  2:728497/141‑1 (MQ=255)
                                                                                                                cGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACg                              <  2:21862/141‑1 (MQ=255)
                                                                                                                 gTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACGt                             <  1:1226304/141‑1 (MQ=255)
                                                                                                                  tttttGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACGtt                            >  1:1068106/1‑141 (MQ=255)
                                                                                                                   ttttGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTCCTCTATCAATAATATTTTGTATTTGTTCACGttt                           <  2:901186/141‑1 (MQ=255)
                                                                                                                     ttGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACGttttt                         <  1:975480/141‑1 (MQ=255)
                                                                                                                     ttGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACGttttt                         <  1:975481/141‑1 (MQ=255)
                                                                                                                      tGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACGTTTTTc                        <  1:183379/141‑1 (MQ=255)
                                                                                                                         ttttttttaCAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACGTTTTTCata                     >  2:1106827/9‑141 (MQ=255)
                                                                                                                         tttATTTGACAAATAATTATTGAGGGTTTTTCTAAGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACGTTTTTCata                     <  2:1305275/141‑1 (MQ=255)
                                                                                                                            atatGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACGTTTTTCATATTc                  >  1:1275985/1‑141 (MQ=255)
                                                                                                                               tGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCACCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACGTTTTTCATATTCAtt               <  2:444075/141‑1 (MQ=255)
                                                                                                                                    atcaatTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACGTTTTTCATATTCATTTTCTa          <  1:1119302/141‑1 (MQ=255)
                                                                                                                                     tcaatTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACGTTTTTCATATTCATTTTCTAc         >  2:1222916/1‑141 (MQ=255)
                                                                                                                                            tGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACGTTTTTCATATTCATTTTCTACAAAATaa  >  1:162481/1‑141 (MQ=255)
                                                                                                                                            tGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACGTTTTTCATATTCATTTTCTACAAAATaa  >  1:208322/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
TCTGAAAATTAAAATTGACTCAAACAACGACAATGATGATTATGCATGATAAAAACAATGCAATAGGTCCACGAAATAAACGGTAATTTCTATCTCAATAAATAGAAATTACCGTTTTTGTTTTATATGACAATCAATTATGGAGGTATTTTCTAGGGCTTTCTTAGATTCGTTACATTGCTTCGCCAATATATTTCAATTAGCTATTCTCGCCCTCACGTACTCTATCAATAATATTTTGTATTTGTTCACGTTTTTCATATTCATTTTCTACAAAATAA  >  CP000730/2753708‑2753988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.