New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 12784728 (0.820)5 (0.160) 5/248 4.1 16.2% intergenic (+67/+262) lctP/spa LctP family L‑lactate permease/immunoglobulin G binding protein A
?CP000730 = 127871 26 (0.830)intergenic (+91/+238) lctP/spa LctP family L‑lactate permease/immunoglobulin G binding protein A
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTAAAAATGACGTTAAAATACAGTATTATATTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/127699‑127847
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcgaactagACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCAAACACAAATAAAAG  <  CP000730/127871‑127737
                                                                                                                                                                                                                                                                                            
ATTAAAAATGACGTTAAAATACAGTATTATATTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATATAATTATTCATGAAT                                                                                                                                                 >  1:398362/1‑141
     AAATGACGTTAAAATACAGTATGTTATTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACAGTTTAAATCTAATTATTCATGAATCGAAC                                                                                                                                            <  1:183139/141‑1
      AATGACGTTAAAATACAGTATTATATTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAAat                                                                                                                                           >  2:72897/1‑139
                                      CTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGACAAGATGCTCATTGCATTTCGTACTAGTT                                                                                                           <  1:152699/141‑1
                                                               ACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTTAGGC‑‑ATTA‑‑‑AAAAATCGAACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTC                                                                             <  1:378497/141‑1
                                                                   ACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTTAGGC‑‑ATTA‑‑‑AAAAATCGAACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTT                                                                         <  2:93835/141‑1
                                                                                      AAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGACAAGATGCTCATTGCATTTCGTACT                                                                                                               <  1:170675/89‑1
                                                                                      AAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGACAAGATGCTCATTGCATTTCGTACT                                                                                                               >  2:170675/1‑89
                                                                                                                                          AATCGAACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCAAACACAAAT       >  1:384035/1‑141
                                                                                                                                             CGAACTAGACAAGATGCTCATTGCATTTAGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCAAACACAAATAAA    >  1:157549/1‑141
                                                                                                                                               AACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCAAACACAAATAAAAG  <  1:34891/141‑1
                                                                                                                                               AACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCAAACACAAATAAAAG  <  1:379251/141‑1
                                                                                                                                                                                                                                                                                            
ATTAAAAATGACGTTAAAATACAGTATTATATTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/127699‑127847
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcgaactagACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCAAACACAAATAAAAG  <  CP000730/127871‑127737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.