New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 127847	28 (0.820)	5 (0.160)	5/248	4.1	16.2%	intergenic (+67/+262)	lctP/spa	LctP family L‑lactate permease/immunoglobulin G binding protein A
	?	CP000730	= 127871	26 (0.830)					intergenic (+91/+238)	lctP/spa	LctP family L‑lactate permease/immunoglobulin G binding protein A
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTT  >  CP000730/127737‑128008                                                                                                                                       |                                                                                                                                          cTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGtt                                                                                                                                     >  1:379251/1‑141 (MQ=255) cTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGtt                                                                                                                                     >  1:34891/1‑141 (MQ=255)   tttATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACTAAATGCAATGAGCATCTTGTCTAGTTCg                                                                                                                                   <  1:157549/141‑1 (MQ=255)      aTTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAtt                                                                                                                                <  1:384035/141‑1 (MQ=255)         tgtgTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATATAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAttttt                                                                                                                             >  2:354354/1‑141 (MQ=255)            ttttttaCGTGTAAACTAACATTAATATTCTAAATATATATATTGTTGTCACTTGGATTCAAATGCCATTTTCATTCTATTTATTCATGAATCGAACTATTACGAAATGCATTGATCATTTTGTCTAGTTCGATTTTTCaa                                                                                                                          >  2:374480/7‑141 (MQ=255)                ggACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGcc                                                                                                                      >  2:306898/1‑141 (MQ=255)                  aCGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTa                                                                                                                    <  2:222265/141‑1 (MQ=255)                  aCGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTa                                                                                                                    <  2:34891/141‑1 (MQ=255)                     tttATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaaaa                                                                                                                 <  1:371661/141‑1 (MQ=255)                           cTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCa                                                                                                           <  2:292284/141‑1 (MQ=255)                                  tAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGt                                                                                                    <  2:358016/141‑1 (MQ=255)                                    atatTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTaa                                                                                                  >  1:133775/1‑141 (MQ=255)                                     tatTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAAt                                                                                                 >  1:58851/1‑141 (MQ=255)                                              tataaataATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGa                                                                                        <  2:259249/141‑1 (MQ=255)                                              tataaataATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGa                                                                                        <  2:145873/141‑1 (MQ=255)                                                          tgtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGc                                                                            <  1:193214/141‑1 (MQ=255)                                                          tgtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATATAATCAGAGTAGTGAGTATTGAGGc                                                                            >  2:114777/1‑141 (MQ=255)                                                             cACTTGGATTCAAATGACATGTTAAATCTAATTATGCATTAATCGAAATAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATAAGAGGAGAAAGTGTTGAGGCggt                                                                         >  2:9879/1‑139 (MQ=255)                                                                attatagcAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCAAATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCa                                                                      <  2:317713/134‑1 (MQ=255)                                                                 tGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAg                                                                     <  2:165691/141‑1 (MQ=255)                                                                     ttCAAATGACATTTTAAATATAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGAATCTTGTCTAGTTCGATGTTTTAATGGCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCCGAAgt                                                                 <  2:398362/141‑1 (MQ=255)                                                                       cAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttg                                                               <  1:77008/141‑1 (MQ=255)                                                                           tGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTa                                                           <  1:163123/141‑1 (MQ=255)                                                                                  ttAAATCTAATTATGCATGAATCGAAGTAGTACGAAATGCAATGAGCATCTTGTCTAGTGCGATTTTTTAATGCCTAAAAATGTCATATATGTAAGCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAaagt                                                    >  2:154573/1‑141 (MQ=255)                                                                                                                     aaTGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAt                 <  2:133775/141‑1 (MQ=255)                                                                                                                        gCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGtt              <  1:150831/141‑1 (MQ=255)                                                                                                                           aTGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGAGTTGCAGAAGTTGTTTAGAAAATTAAAAAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCt           <  2:107837/141‑1 (MQ=255)                                                                                                                                    ttGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCAttt  <  1:52601/141‑1 (MQ=255)                                                                                                                                    ttGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCAttt  >  2:10104/1‑141 (MQ=255)                                                                                                                                       |                                                                                                                                          CTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTT  >  CP000730/127737‑128008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.