New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 127847	28 (0.820)	5 (0.160)	5/248	4.1	16.2%	intergenic (+67/+262)	lctP/spa	LctP family L‑lactate permease/immunoglobulin G binding protein A
	?	CP000730	= 127871	26 (0.830)					intergenic (+91/+238)	lctP/spa	LctP family L‑lactate permease/immunoglobulin G binding protein A
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATATTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGT  >  CP000730/127727‑127958                                                                                                                         |                                                                                                                atatTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATc                                                                                             >  2:52601/1‑141 (MQ=255)  tatTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCt                                                                                            <  2:64648/141‑1 (MQ=255)  tatTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCt                                                                                            <  2:64043/141‑1 (MQ=255)           cTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGtt                                                                                   >  1:34891/1‑141 (MQ=255)           cTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGtt                                                                                   >  1:379251/1‑141 (MQ=255)             tttATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACTAAATGCAATGAGCATCTTGTCTAGTTCg                                                                                 <  1:157549/141‑1 (MQ=255)                aTTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAtt                                                                              <  1:384035/141‑1 (MQ=255)                   tgtgTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATATAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAttttt                                                                           >  2:354354/1‑141 (MQ=255)                      ttttttaCGTGTAAACTAACATTAATATTCTAAATATATATATTGTTGTCACTTGGATTCAAATGCCATTTTCATTCTATTTATTCATGAATCGAACTATTACGAAATGCATTGATCATTTTGTCTAGTTCGATTTTTCaa                                                                        >  2:374480/7‑141 (MQ=255)                          ggACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGcc                                                                    >  2:306898/1‑141 (MQ=255)                            aCGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTa                                                                  <  2:222265/141‑1 (MQ=255)                            aCGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTa                                                                  <  2:34891/141‑1 (MQ=255)                               tttATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaaaa                                                               <  1:371661/141‑1 (MQ=255)                                     cTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCa                                                         <  2:292284/141‑1 (MQ=255)                                            tAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGt                                                  <  2:358016/141‑1 (MQ=255)                                              atatTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTaa                                                >  1:133775/1‑141 (MQ=255)                                               tatTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAAt                                               >  1:58851/1‑141 (MQ=255)                                                        tataaataATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGa                                      <  2:259249/141‑1 (MQ=255)                                                        tataaataATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGa                                      <  2:145873/141‑1 (MQ=255)                                                                    tgtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGc                          <  1:193214/141‑1 (MQ=255)                                                                    tgtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATATAATCAGAGTAGTGAGTATTGAGGc                          >  2:114777/1‑141 (MQ=255)                                                                       cACTTGGATTCAAATGACATGTTAAATCTAATTATGCATTAATCGAAATAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATAAGAGGAGAAAGTGTTGAGGCggt                       >  2:9879/1‑139 (MQ=255)                                                                          attatagcAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCAAATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCa                    <  2:317713/134‑1 (MQ=255)                                                                           tGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAg                   <  2:165691/141‑1 (MQ=255)                                                                               ttCAAATGACATTTTAAATATAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGAATCTTGTCTAGTTCGATGTTTTAATGGCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCCGAAgt               <  2:398362/141‑1 (MQ=255)                                                                                 cAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttg             <  1:77008/141‑1 (MQ=255)                                                                                     tGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTa         <  1:163123/141‑1 (MQ=255)                                                                                            ttAAATCTAATTATGCATGAATCGAAGTAGTACGAAATGCAATGAGCATCTTGTCTAGTGCGATTTTTTAATGCCTAAAAATGTCATATATGTAAGCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAaagt  >  2:154573/1‑141 (MQ=255)                                                                                                                         |                                                                                                                ATATTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGT  >  CP000730/127727‑127958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.