New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1410425 =	29 (1.000)	3 (0.110)	3/246	3.7	10.2%	coding (483/729 nt)	trpA	tryptophan synthase alpha subunit
	?	CP000730	1410516 =	26 (0.960)					coding (574/729 nt)	trpA	tryptophan synthase alpha subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGATATCGTATCCCATGCGGAAGGCTTTATTTATACTGTGACGATGAATGCGACAACAGGGCAAAACGGTGCGTTTCATCCAGAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCATTGTCATTGGTAGCGAAATCGTTAAGCGATTTAAATCTAACACGCGTGAGGAAATCATTAAATATTTACAATCTATCCAACAA  >  CP000730/1410376‑1410656                                                                                                                                             |                                                                                                                                             aaGATATCGTATCCCATGCGGAAGGCTTTATTTATACTGTGACGATGAATGCGACAACAGGGCAAAACGGTGCGTTTCATCCAGAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAg                                                                                                                                              <  1:233930/141‑1 (MQ=255) aaGATATCGTATCCCATGCGGAAGGCTTTATTTATACTGTGACGATGAATGCGACAACAGGGCAAAACGGTGCGTTTCATCCAGAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAg                                                                                                                                              <  2:40097/141‑1 (MQ=255) aaGATATCGTATCCCATGCGGAAGGATTTATTTATACTGTGACGATGAATGCGAAAACAGGGCAAAACGGTGCGTTTCATCAAAAAAAAAAAAGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAg                                                                                                                                              <  2:126420/141‑1 (MQ=255)            tCCCATGCGGAAGGCTTTATTTATACTGTGACGATGAATGCGACAACAGGGCAAAACGGTGCGTTTCATCCAGAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGtata                                                                                                                                   <  1:291571/141‑1 (MQ=255)            tCCCATGCGGAAGGCTTTATTTATACTGTGACGATGAATGCGACAACAGGGCAAAACGGTGCGTTTCATCCAGAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGtata                                                                                                                                   <  1:291546/141‑1 (MQ=255)                       aGGCTTTATTTATACTGTGACGATGAATGCGACAACAGGGCAAAACGGTGCGTTTCATCCAGAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACcaca                                                                                                                        >  1:38410/1‑141 (MQ=255)                       aGGCTTTATTTATACTGTGACGATGAATGCGACAACAGGGCAAAACGGTGCGTTTCATCCAGAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACcaca                                                                                                                        >  1:194102/1‑141 (MQ=255)                        ggCTTTATTTATACTGTGACGATGAATGCGACAACAGGGCAAAACGGTGCGTTTCATCCAGAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCacaa                                                                                                                       <  2:319647/141‑1 (MQ=255)                             tatttatACTGTGACGATGAATGCGACAACAGGGCAAAACGGTGCGTTTCATCCAGAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGt                                                                                                                  >  1:324082/1‑141 (MQ=255)                                               gAATGCGACAACAGGGCAAAACGGTGCGTTTCATCCAGAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAgtggcctgttaaga                                                                                                >  2:325281/1‑128 (MQ=255)                                                              gCAAAACGGTGCGTTTCATCCAGAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCATTGt                                                                                 >  1:28933/1‑141 (MQ=255)                                                               cAAAACGGTGCGTTTCATCCAGAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCATTGTc                                                                                <  1:106732/141‑1 (MQ=255)                                                                         cGTTTCATCCAGAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCATTGTCATTGGTAGCg                                                                      >  2:288927/1‑141 (MQ=255)                                                                                    gAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCATTGTCATTGGTAGCGAAATCGTTAAg                                                           <  2:80524/141‑1 (MQ=255)                                                                                    gAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCAAAACATGTTGCAGATATAAAAGAGGTTGCAGATGTCATTGTCATTGGTAGCGAAATCGTTAAg                                                           <  2:139179/141‑1 (MQ=255)                                                                                          aaaCGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCATTGTCATTGGTAGCGAAATCGTTAAGCGAttt                                                     >  2:168542/1‑141 (MQ=255)                                                                                                   aTTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCATTGTCATTGGTAGCGAAATCGTTAAGCGATTTAAATCTAac                                            >  2:121311/1‑141 (MQ=255)                                                                                                   aTTGAGTCAATTAAAGCGATAGCCAATGTGCAAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCATTGTCATTGGTAGCGAAATCGTTAAGCGATTTAAATCTAac                                            >  1:25827/1‑141 (MQ=255)                                                                                                      gAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGta                                                                                                                                     >  2:145785/1‑49 (MQ=255)                                                                                                      gAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGta                                                                                                                                     <  1:145785/49‑1 (MQ=255)                                                                                                             ttAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAagag                                                                                                  >  2:261572/1‑77 (MQ=255)                                                                                                             ttAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAagag                                                                                                  <  1:261572/77‑1 (MQ=255)                                                                                                                    gATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCATATGGCATTGTCATTGGTAGCGAAATCGTTAAGCGATTTAAATCTAACACGCGTGAGGAAATCAt                           >  2:97400/1‑141 (MQ=255)                                                                                                                         ccAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCATTGTCATTGGTAGCGAAATCGTTAAGCGATTTAAATCTAACACGCGTGAGGAAATCATTAAat                      <  1:225860/141‑1 (MQ=255)                                                                                                                           aaTGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCACAACGTGTTGCAGATATAAAAGAGGTTGCAGATGGCATTGTCATTGGTAGCGAAATCGTTAAGCGATTTAAATCTAACACGCGTGAGGAAATCATTAAatat                    <  2:324082/141‑1 (MQ=255)                                                                                                                                  cAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCATTGTCATTGGTAGCGAAATCGTTAAGCGATTTAAATCTAACACGCGTGAGGAAATCATTAAATATTTACAAt             >  2:153629/1‑141 (MQ=255)                                                                                                                                             ggATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCATTGTCATTGGTAGCGAAATCGTTAAGCGATTTAAATCTAACACGCGTGAGGAAATCATTAAATATTTACAATCTATCcaacaa  >  2:191457/1‑141 (MQ=255)                                                                                                                                             ggATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCATTGTCATTGGTAGCGAAATCGTTAAGCGATTTAAATCTAACACGCGTGAGGAAATCATTAAATATTTACAATCTATCcaacaa  >  2:329067/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                             AAGATATCGTATCCCATGCGGAAGGCTTTATTTATACTGTGACGATGAATGCGACAACAGGGCAAAACGGTGCGTTTCATCCAGAATTAAAACGAAAAATTGAGTCAATTAAAGCGATAGCCAATGTGCCAGTTGTCGCAGGATTTGGTATAAGAACACCACAACATGTTGCAGATATAAAAGAGGTTGCAGATGGCATTGTCATTGGTAGCGAAATCGTTAAGCGATTTAAATCTAACACGCGTGAGGAAATCATTAAATATTTACAATCTATCCAACAA  >  CP000730/1410376‑1410656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.