mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 44.0% | 22.2 / 112.5 | 91 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 108 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381292 = | NA (NA) | 17 (0.200) | 10/278 | 8.4 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 228016 = | NA (NA) | 13 (0.150) | 9/282 | 8.9 | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 318648 | 130 (1.430) | 9 (0.110) | 7/274 | 9.7 | 7.2% | intergenic (‑81/+28) | rclB/rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| ? | NC_000913 | = 318654 | 112 (1.330) | intergenic (‑87/+22) | rclB/rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family | |||||
| * | ? | NC_000913 | = 2982463 | 97 (1.070) | 8 (0.090) | 7/280 | 9.8 | 8.1% | intergenic (‑281/+34) | araE/kduD | arabinose transporter/2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase; KDG oxidoreductase; 20‑ketosteroid reductase |
| ? | NC_000913 | = 2982467 | 91 (1.060) | intergenic (‑285/+30) | araE/kduD | arabinose transporter/2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase; KDG oxidoreductase; 20‑ketosteroid reductase | |||||
| * | ? | NC_000913 | 951207 = | 115 (1.270) | 7 (0.080) | 7/284 | 9.9 | 5.9% | intergenic (‑127/+65) | pflA/pflB | pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| ? | NC_000913 | 951233 = | 111 (1.270) | intergenic (‑153/+39) | pflA/pflB | pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 | |||||
| * | ? | NC_000913 | = 797973 | 77 (0.850) | 8 (0.090) | 7/284 | 9.9 | 9.7% | coding (459/819 nt) | ybhA | pyridoxal phosphate (PLP) phosphatase |
| ? | NC_000913 | = 797984 | 75 (0.860) | coding (448/819 nt) | ybhA | pyridoxal phosphate (PLP) phosphatase | |||||
| * | ? | NC_000913 | = 1567465 | 104 (1.140) | 7 (0.090) | 6/268 | 10.0 | 6.6% | intergenic (‑325/+39) | dosC/yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| ? | NC_000913 | = 1567472 | 105 (1.280) | intergenic (‑332/+32) | dosC/yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog | |||||
| * | ? | NC_000913 | 781369 = | 56 (0.620) | 16 (0.180) +G |
7/294 | 10.2 | 28.7% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521128 | 24 (0.260) | intergenic (+2/‑45) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 4383649 = | 111 (1.220) | 6 (0.070) | 6/278 | 10.3 | 5.4% | intergenic (+29/‑190) | epmA/yjeM | Elongation Factor P Lys34 lysyltransferase/putative transporter |
| ? | NC_000913 | 4383674 = | 104 (1.220) | intergenic (+54/‑165) | epmA/yjeM | Elongation Factor P Lys34 lysyltransferase/putative transporter | |||||
| * | ? | NC_000913 | = 3943624 | NA (NA) | 6 (0.070) | 6/282 | 10.4 | 12.5% | intergenic (+114/‑80) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3943642 | 44 (0.480) | intergenic (+132/‑62) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||