mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 33 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4456090 = | 63 (0.920) | 3 (0.050) | 3/268 | NT | 4.5% | coding (306/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| ? | NC_000913 | 4456140 = | 65 (0.980) | coding (356/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase | |||||
| * | ? | NC_000913 | 4388615 = | 79 (1.150) | 3 (0.050) | 3/262 | NT | 4.1% | coding (756/3324 nt) | mscM | mechanosensitive channel protein, miniconductance |
| ? | NC_000913 | 4388655 = | 64 (0.990) | coding (716/3324 nt) | mscM | mechanosensitive channel protein, miniconductance | |||||
| * | ? | NC_000913 | 4326878 = | 96 (1.400) | 3 (0.050) | 3/258 | NT | 3.4% | intergenic (‑144/‑257) | yjdM/crfC | zinc‑ribbon family protein/clamp‑binding sister replication fork colocalization protein, dynamin‑related |
| ? | NC_000913 | 4326902 = | 81 (1.270) | intergenic (‑168/‑233) | yjdM/crfC | zinc‑ribbon family protein/clamp‑binding sister replication fork colocalization protein, dynamin‑related | |||||
| * | ? | NC_000913 | 4252074 = | 83 (1.210) | 3 (0.050) | 3/264 | NT | 3.7% | pseudogene (1114/1323 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing |
| ? | NC_000913 | 4252093 = | 78 (1.190) | pseudogene (1133/1323 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing | |||||
| * | ? | NC_000913 | = 4090007 | 69 (1.010) | 3 (0.050) | 3/268 | NT | 4.2% | coding (919/1071 nt) | frvX | putative peptidase |
| ? | NC_000913 | = 4090040 | 70 (1.050) | coding (886/1071 nt) | frvX | putative peptidase | |||||
| * | ? | NC_000913 | = 4072784 | 78 (1.140) | 3 (0.040) | 3/270 | NT | 4.0% | coding (788/897 nt) | yihU | 3‑sulpholactaldehyde (SLA) reductase, NADH‑dependent; gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent |
| ? | NC_000913 | = 4072835 | 66 (0.990) | coding (737/897 nt) | yihU | 3‑sulpholactaldehyde (SLA) reductase, NADH‑dependent; gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent | |||||
| * | ? | NC_000913 | = 4054005 | 77 (1.120) | 3 (0.050) | 3/264 | NT | 3.9% | coding (1274/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | NC_000913 | = 4054034 | 74 (1.130) | coding (1245/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
| * | ? | NC_000913 | = 4040727 | 74 (1.080) | 3 (0.050) | 3/258 | NT | 5.0% | intergenic (+91/+179) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4171852 | 46 (0.720) | intergenic (+96/‑205) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 3880427 = | 166 (2.420) | 3 (0.050) | 3/266 | NT | 1.9% | coding (795/1074 nt) | recF | gap repair protein |
| ? | NC_000913 | 3880485 = | 149 (2.260) | coding (737/1074 nt) | recF | gap repair protein | |||||
| * | ? | NC_000913 | 3864573 = | 120 (1.750) | 3 (0.050) | 3/260 | NT | 2.6% | coding (675/717 nt) | yidP | UTRA domain‑containing GntR family putative transcriptional regulator |
| ? | NC_000913 | 3864602 = | 108 (1.680) | coding (704/717 nt) | yidP | UTRA domain‑containing GntR family putative transcriptional regulator | |||||