mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 14,116 | A→G | 6.3% | intergenic (+37/‑52) | dnaK → / → dnaJ | chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone |
| RA | 14,119 | G→A | 6.4% | intergenic (+40/‑49) | dnaK → / → dnaJ | chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone |
| RA | 14,124 | T→A | 5.7% | intergenic (+45/‑44) | dnaK → / → dnaJ | chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone |
| RA | 14,129 | T→C | 8.7% | intergenic (+50/‑39) | dnaK → / → dnaJ | chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone |
| RA | 14,132 | C→T | 8.7% | intergenic (+53/‑36) | dnaK → / → dnaJ | chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone |
| RA | 73,013 | G→C | 9.5% | R503R (CGC→CGG) | thiP ← | thiamine/thiamine pyrophosphate ABC transporter permease |
| RA | 98,451 | A→T | 6.4% | S17C (AGT→TGT) | ftsW → | putative lipid II flippase; integral membrane protein; FtsZ ring stabilizer |
| RA | 121,012 | G→A | 5.5% | G180G (GGC→GGT) | aroP ← | aromatic amino acid transporter |
| RA | 155,248 | A→G | 5.0% | I60T (ATA→ACA) | htrE ← | putative outer membrane usher protein |
| RA | 162,603 | A→T | 6.7% | M167L (ATG→TTG) | hrpB → | putative ATP‑dependent helicase |
| RA | 163,418 | A→T | 6.6% | K438N (AAA→AAT) | hrpB → | putative ATP‑dependent helicase |
| RA | 163,419 | A→T | 5.8% | I439F (ATT→TTT) | hrpB → | putative ATP‑dependent helicase |
| RA | 167,291 | G→A | 5.2% | intergenic (+27/‑193) | mrcB → / → fhuA | fused glycosyl transferase and transpeptidase/ferrichrome outer membrane transporter |
| RA | 167,295 | T→C | 5.2% | intergenic (+31/‑189) | mrcB → / → fhuA | fused glycosyl transferase and transpeptidase/ferrichrome outer membrane transporter |
| RA | 192,579 | A→T | 5.9% | *242L (TAA→TTA) | pyrH → | uridylate kinase |
| RA | 209,172 | C→G | 6.2% | N184K (AAC→AAG) | accA → | acetyl‑CoA carboxylase, carboxytransferase, alpha subunit |
| RA | 222,958 | Δ1 bp | 100% | coding (126/576 nt) | gmhB → | D,D‑heptose 1,7‑bisphosphate phosphatase |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 260,145 | G→C | 5.6% | intergenic (‑45/‑243) | phoE ← / → proB | outer membrane phosphoporin protein E/gamma‑glutamate kinase |
| RA | 289,256 | G→C | 8.9% | intergenic (‑94/+45) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 289,257 | T→A | 9.0% | intergenic (‑95/+44) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 458,742 | T→A | 5.6% | intergenic (+42/‑146) | clpX → / → lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| RA | 475,971 | C→G | 6.2% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 6.4% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 478,750 | C→T | 5.4% | intergenic (‑133/+31) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 478,752 | G→A | 5.4% | intergenic (‑135/+29) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 478,757 | T→C | 5.4% | intergenic (‑140/+24) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 478,759 | A→G | 5.3% | intergenic (‑142/+22) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 595,519 | T→A | 6.0% | intergenic (‑76/‑81) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| RA | 595,520 | T→A | 5.1% | intergenic (‑77/‑80) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| RA | 645,069 | G→A | 6.7% | intergenic (‑66/+48) | rna ← / ← citT | ribonuclease I/citrate/succinate antiporter; citrate carrier |
| RA | 645,073 | T→C | 5.9% | intergenic (‑70/+44) | rna ← / ← citT | ribonuclease I/citrate/succinate antiporter; citrate carrier |
| RA | 645,074 | T→C | 5.7% | intergenic (‑71/+43) | rna ← / ← citT | ribonuclease I/citrate/succinate antiporter; citrate carrier |
| RA | 691,791 | G→A | 6.8% | intergenic (‑7/+83) | ybeX ← / ← ybeY | putative ion transport/ssRNA‑specific endoribonuclease; 16S rRNA 3' end maturation and quality control co‑endoribonuclease working with RNase R; rRNA transcription antitermination factor |
| RA | 708,668 | C→T | 8.4% | A112V (GCG→GTG) | chiP → | chitoporin, uptake of chitosugars |
| RA | 715,749 | T→C | 8.0% | V113A (GTT→GCT) | ybfP → | lipoprotein |
| RA | 715,755 | A→C | 8.0% | Q115P (CAG→CCG) ‡ | ybfP → | lipoprotein |
| RA | 715,756 | G→T | 11.3% | Q115H (CAG→CAT) ‡ | ybfP → | lipoprotein |
| RA | 715,762 | G→A | 7.7% | K117K (AAG→AAA) | ybfP → | lipoprotein |
| RA | 741,034 | A→G | 5.7% | intergenic (+109/+41) | phr → / ← dtpD | deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D |
| RA | 741,041 | G→T | 5.5% | intergenic (+116/+34) | phr → / ← dtpD | deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D |
| RA | 741,043 | C→G | 5.6% | intergenic (+118/+32) | phr → / ← dtpD | deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D |
| RA | 741,045 | A→C | 6.4% | intergenic (+120/+30) | phr → / ← dtpD | deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D |
| RA | 741,051 | G→T | 6.1% | intergenic (+126/+24) | phr → / ← dtpD | deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D |
| RA | 741,052 | C→T | 5.3% | intergenic (+127/+23) | phr → / ← dtpD | deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D |
| RA | 875,408 | G→T | 13.9% | G25V (GGG→GTG) | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 900,201 | T→G | 5.5% | K125N (AAA→AAC) | artJ ← | arginine ABC transporter periplasmic binding protein |
| RA | 900,209 | C→A | 5.8% | D123Y (GAT→TAT) | artJ ← | arginine ABC transporter periplasmic binding protein |
| RA | 959,667 | A→C | 7.5% | T286P (ACC→CCC) | aroA → | 5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 1,017,074 | A→G | 5.7% | L409P (CTG→CCG) | ycbZ ← | putative peptidase |
| RA | 1,058,324 | C→A | 5.7% | H81N (CAT→AAT) | torC → | trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
| RA | 1,058,696 | A→G | 5.7% | T205A (ACG→GCG) | torC → | trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
| RA | 1,060,382 | A→T | 5.4% | Q376L (CAG→CTG) | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
| RA | 1,060,388 | T→C | 5.5% | M378T (ATG→ACG) | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
| RA | 1,145,939 | A→G | 7.1% | intergenic (+40/+72) | rluC → / ← yceF | 23S rRNA pseudouridine(955,2504,2580) synthase/m(7)GTP pyrophosphatase |
| RA | 1,145,940 | A→C | 8.2% | intergenic (+41/+71) | rluC → / ← yceF | 23S rRNA pseudouridine(955,2504,2580) synthase/m(7)GTP pyrophosphatase |
| RA | 1,145,946 | T→A | 6.2% | intergenic (+47/+65) | rluC → / ← yceF | 23S rRNA pseudouridine(955,2504,2580) synthase/m(7)GTP pyrophosphatase |
| RA | 1,145,947 | T→A | 6.2% | intergenic (+48/+64) | rluC → / ← yceF | 23S rRNA pseudouridine(955,2504,2580) synthase/m(7)GTP pyrophosphatase |
| RA | 1,145,954 | C→T | 5.7% | intergenic (+55/+57) | rluC → / ← yceF | 23S rRNA pseudouridine(955,2504,2580) synthase/m(7)GTP pyrophosphatase |
| RA | 1,146,736 | A→G | 6.1% | noncoding (148/169 nt) | psrD → | novel Novel sRNA, function unknown |
| RA | 1,146,740 | C→G | 6.1% | noncoding (152/169 nt) | psrD → | novel Novel sRNA, function unknown |
| RA | 1,146,744 | C→T | 6.5% | noncoding (156/169 nt) | psrD → | novel Novel sRNA, function unknown |
| RA | 1,314,682 | A→T | 7.3% | intergenic (+24/+36) | ompW → / ← yciE | outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein |
| RA | 1,314,683 | T→A | 7.3% | intergenic (+25/+35) | ompW → / ← yciE | outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein |
| RA | 1,314,684 | A→T | 7.1% | intergenic (+26/+34) | ompW → / ← yciE | outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein |
| RA | 1,357,227 | A→G | 5.3% | intergenic (‑117/+196) | sapA ← / ← ymjA | antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein |
| RA | 1,357,230 | T→A | 5.8% | intergenic (‑120/+193) | sapA ← / ← ymjA | antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein |
| RA | 1,357,233 | C→T | 5.4% | intergenic (‑123/+190) | sapA ← / ← ymjA | antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein |
| RA | 1,357,236 | T→C | 5.2% | intergenic (‑126/+187) | sapA ← / ← ymjA | antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein |
| RA | 1,393,995 | T→C | 8.3% | Y257H (TAC→CAC) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
| RA | 1,409,134 | T→A | 6.3% | noncoding (6/122 nt) | fnrS → | FNR‑activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq‑dependent; mediates negative FNR regulation |
| RA | 1,409,145 | T→C | 6.2% | noncoding (17/122 nt) | fnrS → | FNR‑activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq‑dependent; mediates negative FNR regulation |
| RA | 1,409,156 | G→A | 6.7% | noncoding (28/122 nt) | fnrS → | FNR‑activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq‑dependent; mediates negative FNR regulation |
| RA | 1,441,833 | G→C | 6.9% | intergenic (‑90/+21) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,441,837 | G→C | 5.5% | intergenic (‑94/+17) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,466,201 | T→C | 5.9% | pseudogene (810/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,541,626 | Δ1 bp | 10.3% | coding (965/3741 nt) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,552,191 | C→A | 21.7% | intergenic (+200/+207) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,263 | G→T | 9.3% | intergenic (+272/+135) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,652,362 | A→G | 5.5% | pseudogene (812/1158 nt) | intQ → | pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
| RA | 1,652,363 | A→G | 5.5% | pseudogene (813/1158 nt) | intQ → | pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
| RA | 1,652,368 | C→T | 5.6% | pseudogene (818/1158 nt) | intQ → | pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
| RA | 1,652,369 | C→T | 5.6% | pseudogene (819/1158 nt) | intQ → | pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
| RA | 1,660,200 | C→G | 6.8% | A711G (GCC→GGC) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,206 | G→T | 6.7% | R713L (CGT→CTT) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,679,398 | T→A | 7.3% | intergenic (+27/‑159) | ydgH → / → ydgI | DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter |
| RA | 1,679,400 | G→C | 7.2% | intergenic (+29/‑157) | ydgH → / → ydgI | DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter |
| RA | 1,679,402 | T→A | 6.0% | intergenic (+31/‑155) | ydgH → / → ydgI | DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter |
| RA | 1,703,251 | A→T | 7.5% | intergenic (+17/+17) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,706,114 | G→A | 8.0% | V116V (GTG→GTA) | rsxA → | SoxR iron‑sulfur cluster reduction factor component; inner membrane protein of electron transport complex |
| RA | 1,765,157 | T→A | 11.2% | intergenic (‑35/+65) | ydiH ← / ← menI | uncharacterized protein/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase |
| RA | 1,765,160 | C→G | 9.1% | intergenic (‑38/+62) | ydiH ← / ← menI | uncharacterized protein/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase |
| RA | 1,765,161 | A→G | 9.1% | intergenic (‑39/+61) | ydiH ← / ← menI | uncharacterized protein/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase |
| RA | 1,765,162 | C→T | 9.2% | intergenic (‑40/+60) | ydiH ← / ← menI | uncharacterized protein/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase |
| RA | 1,765,163 | C→G | 9.1% | intergenic (‑41/+59) | ydiH ← / ← menI | uncharacterized protein/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase |
| RA | 1,765,166 | T→A | 8.5% | intergenic (‑44/+56) | ydiH ← / ← menI | uncharacterized protein/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase |
| RA | 1,865,682 | G→C | 5.6% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,944,744 | T→C | 5.9% | S205G (AGT→GGT) | ruvB ← | ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,988,051 | A→T | 11.7% | intergenic (‑92/‑171) | azuC ← / → yecR | acid‑inducible small membrane‑associated protein/lipoprotein, function unknown |
| RA | 2,019,460 | G→A | 100% | V359I (GTC→ATC) | fliK → | flagellar hook‑length control protein |
| RA | 2,078,297 | Δ1 bp | 7.4% | intergenic (+190/+252) | yeeW → / ← yoeD | CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| RA | 2,078,301 | A→T | 7.6% | intergenic (+194/+248) | yeeW → / ← yoeD | CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| RA | 2,078,304 | A→T | 7.7% | intergenic (+197/+245) | yeeW → / ← yoeD | CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| RA | 2,078,306:1 | +G | 7.8% | intergenic (+199/+243) | yeeW → / ← yoeD | CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| RA | 2,122,676 | T→A | 8.8% | M102L (ATG→TTG) | cpsG ← | phosphomannomutase |
| RA | 2,125,654 | T→C | 5.3% | Q31Q (CAA→CAG) | wcaI ← | putative glycosyl transferase |
| RA | 2,135,866 | A→G | 5.7% | L78P (CTG→CCG) | wzb ← | colanic acid production protein‑tyrosine‑phosphatase; Wzc‑P dephosphorylase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,354,885 | G→A | 5.5% | A207A (GCG→GCA) | glpB → | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase membrane anchor subunit |
| RA | 2,373,177 | G→A | 8.2% | G96S (GGC→AGC) | arnF → | undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit |
| RA | 2,373,180 | T→C | 5.9% | W97R (TGG→CGG) | arnF → | undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit |
| JC JC | 2,375,828 | IS186 (+) +4 bp | 100% | coding (132‑135/963 nt) | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,395,812 | G→C | 6.4% | L29V (CTG→GTG) | nuoJ ← | NADH:ubiquinone oxidoreductase, membrane subunit J |
| RA | 2,399,876 | G→A | 5.8% | T97I (ACC→ATC) | nuoG ← | NADH:ubiquinone oxidoreductase, chain G |
| RA | 2,399,878 | C→G | 5.6% | M96I (ATG→ATC) ‡ | nuoG ← | NADH:ubiquinone oxidoreductase, chain G |
| RA | 2,399,880 | T→C | 5.6% | M96V (ATG→GTG) ‡ | nuoG ← | NADH:ubiquinone oxidoreductase, chain G |
| RA | 2,425,289 | C→T | 6.3% | G210S (GGT→AGT) | hisQ ← | histidine ABC transporter permease |
| RA | 2,462,677 | A→T | 6.3% | intergenic (+31/‑335) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,678 | T→A | 6.6% | intergenic (+32/‑334) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,679 | A→T | 6.1% | intergenic (+33/‑333) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,504,799 | T→A | 6.1% | K250M (AAG→ATG) ‡ | ypdE ← | aminopeptidase |
| RA | 2,504,800 | T→A | 6.1% | K250* (AAG→TAG) ‡ | ypdE ← | aminopeptidase |
| RA | 2,547,696 | G→A | 7.2% | A342T (GCA→ACA) | murP → | N‑acetylmuramic acid permease, EIIBC component, PTS system |
| RA | 2,592,989 | A→G | 7.1% | intergenic (+27/+83) | ypfN → / ← ypfH | putative membrane protein, UPF0370 family/palmitoyl‑CoA esterase activity, uncertain physiological substrate |
| RA | 2,592,990 | A→C | 7.3% | intergenic (+28/+82) | ypfN → / ← ypfH | putative membrane protein, UPF0370 family/palmitoyl‑CoA esterase activity, uncertain physiological substrate |
| RA | 2,593,003 | G→T | 8.4% | intergenic (+41/+69) | ypfN → / ← ypfH | putative membrane protein, UPF0370 family/palmitoyl‑CoA esterase activity, uncertain physiological substrate |
| RA | 2,593,004 | C→T | 7.6% | intergenic (+42/+68) | ypfN → / ← ypfH | putative membrane protein, UPF0370 family/palmitoyl‑CoA esterase activity, uncertain physiological substrate |
| RA | 2,652,132 | C→G | 7.0% | V52V (GTG→GTC) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,657,426 | G→A | 5.8% | L504L (CTG→TTG) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,657,433 | A→T | 5.6% | S501S (TCT→TCA) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,657,440 | T→C | 5.8% | K499R (AAA→AGA) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,673,783 | G→A | 10.2% | intergenic (+15/+33) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,784 | C→A | 9.5% | intergenic (+16/+32) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,790 | G→T | 9.1% | intergenic (+22/+26) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,791 | A→C | 10.7% | intergenic (+23/+25) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,797 | T→G | 11.4% | intergenic (+29/+19) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,798 | T→C | 9.6% | intergenic (+30/+18) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,761,623 | C→A | 6.7% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,775,502 | T→C | 5.7% | intergenic (+481/‑43) | yfjW → / → ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related |
| RA | 2,775,503 | C→T | 5.7% | intergenic (+482/‑42) | yfjW → / → ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related |
| RA | 2,775,504 | A→G | 5.7% | intergenic (+483/‑41) | yfjW → / → ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related |
| RA | 2,775,505 | G→A | 5.8% | intergenic (+484/‑40) | yfjW → / → ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related |
| RA | 2,834,232 | C→G | 6.9% | T107T (ACC→ACG) | norW → | NADH:flavorubredoxin oxidoreductase |
| RA | 2,834,234 | G→T | 7.1% | G108V (GGT→GTT) | norW → | NADH:flavorubredoxin oxidoreductase |
| RA | 2,839,326 | C→G | 8.4% | intergenic (‑62/‑198) | ascG ← / → ascF | asc operon transcriptional repressor; prpBC operon repressor/cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| RA | 2,863,772 | G→A | 5.6% | R60R (CGG→CGA) | ygbL → | putative class II aldolase |
| RA | 2,863,777 | C→G | 5.6% | S62C (TCC→TGC) ‡ | ygbL → | putative class II aldolase |
| RA | 2,863,778 | C→G | 5.6% | S62S (TCC→TCG) ‡ | ygbL → | putative class II aldolase |
| RA | 2,863,783 | T→C | 5.5% | V64A (GTC→GCC) | ygbL → | putative class II aldolase |
| RA | 2,866,487 | G→C | 5.4% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,488 | G→C | 5.4% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,904,212 | G→A | 100% | intergenic (+838/+535) | ygcE → / ← queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| RA | 2,919,557 | A→G | 7.1% | L397P (CTG→CCG) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
| RA | 2,919,561 | C→T | 7.5% | G396S (GGT→AGT) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
| RA | 2,967,529 | A→C | 14.1% | G302G (GGT→GGG) | ptsP ← | PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |
| RA | 3,020,511 | C→G | 6.2% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,057,140 | A→G | 6.6% | intergenic (+152/+38) | sibC → / ← serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,057,145 | G→C | 6.2% | intergenic (+157/+33) | sibC → / ← serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,057,150 | C→T | 6.8% | intergenic (+162/+28) | sibC → / ← serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,059,704 | A→T | 8.3% | intergenic (‑3/‑49) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,079,856 | C→G | 6.9% | A594P (GCT→CCT) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,080,449 | A→G | 6.0% | I396T (ATC→ACC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,146,761 | T→G | 8.1% | intergenic (‑24/+95) | yghW ← / ← yghX | DUF2623 family protein/pseudogene, dienlactone hydrolase family |
| RA | 3,146,762 | G→A | 8.3% | intergenic (‑25/+94) | yghW ← / ← yghX | DUF2623 family protein/pseudogene, dienlactone hydrolase family |
| RA | 3,146,763 | T→C | 8.4% | intergenic (‑26/+93) | yghW ← / ← yghX | DUF2623 family protein/pseudogene, dienlactone hydrolase family |
| RA | 3,146,764 | C→A | 9.8% | intergenic (‑27/+92) | yghW ← / ← yghX | DUF2623 family protein/pseudogene, dienlactone hydrolase family |
| RA | 3,171,852 | C→T | 6.3% | intergenic (+19/+27) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,857 | A→T | 6.5% | intergenic (+24/+22) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,858 | A→T | 6.5% | intergenic (+25/+21) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,863 | A→G | 6.6% | intergenic (+30/+16) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,328,183 | T→A | 5.4% | intergenic (+100/+56) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,368,219 | G→A | 5.1% | T131T (ACG→ACA) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,368,220 | C→G | 5.8% | L132V (CTG→GTG) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,376,265 | G→C | 6.7% | intergenic (+29/+14) | dcuD → / ← sspB | putative transporter/ClpXP protease specificity enhancing factor |
| RA | 3,390,661 | T→A | 6.2% | K456N (AAA→AAT) | tldD ← | putative peptidase |
| RA | 3,423,396 | T→G | 7.0% | intergenic (+202/+27) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,439,588 | G→C | 5.1% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,539,816 | T→A | 5.1% | intergenic (+110/‑347) | yhgF → / → feoA | putative transcriptional accessory protein/ferrous iron transporter, protein A |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,570,714:1 | +T | 6.1% | coding (606/1974 nt) | glgX ← | glycogen debranching enzyme |
| RA | 3,570,719 | C→G | 5.3% | V201L (GTG→CTG) | glgX ← | glycogen debranching enzyme |
| RA | 3,570,724 | Δ1 bp | 5.8% | coding (596/1974 nt) | glgX ← | glycogen debranching enzyme |
| RA | 3,644,343 | A→T | 5.8% | F280L (TTT→TTA) | prlC ← | oligopeptidase A |
| RA | 3,781,101 | A→C | 13.7% | intergenic (+84/‑114) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,781,103 | A→C | 16.7% | intergenic (+86/‑112) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,832,797 | T→G | 6.8% | N581H (AAC→CAC) | yicI ← | putative alpha‑glucosidase |
| JC JC | 3,890,075 | IS5 (–) +4 bp | 100% | coding (1346‑1349/1416 nt) | tnaA → | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| RA | 3,891,502 | C→G | 5.1% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,504 | T→A | 7.4% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,506 | C→G | 5.5% | intergenic (+23/‑109) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,901,308 | A→G | 5.3% | W305R (TGG→CGG) | bglH ← | carbohydrate‑specific outer membrane porin, cryptic |
| RA | 3,908,428 | C→G | 6.0% | intergenic (‑62/+121) | pstB ← / ← pstA | phosphate ABC transporter ATPase/phosphate ABC transporter permease |
| RA | 3,908,435 | T→G | 7.1% | intergenic (‑69/+114) | pstB ← / ← pstA | phosphate ABC transporter ATPase/phosphate ABC transporter permease |
| RA | 3,908,443 | C→G | 6.6% | intergenic (‑77/+106) | pstB ← / ← pstA | phosphate ABC transporter ATPase/phosphate ABC transporter permease |
| RA | 3,965,065 | G→A | 6.0% | A189V (GCA→GTA) | rhlB ← | ATP‑dependent RNA helicase |
| RA | 3,969,429 | A→C | 6.5% | K133N (AAA→AAC) | wzzE → | Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
| RA | 3,969,435 | T→A | 6.1% | D135E (GAT→GAA) | wzzE → | Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
| RA | 3,969,436 | G→T | 6.3% | A136S (GCG→TCG) | wzzE → | Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
| RA | 3,969,441 | G→T | 6.4% | A137A (GCG→GCT) | wzzE → | Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
| RA | 3,990,679 | T→G | 7.2% | S30R (AGC→CGC) | hemC ← | hydroxymethylbilane synthase |
| RA | 4,023,526 | T→G | 7.5% | intergenic (+14/‑28) | tatC → / → tatD | TatABCE protein translocation system subunit/quality control of Tat‑exported FeS proteins; Mg‑dependent cytoplasmic DNase |
| RA | 4,051,259 | G→T | 8.1% | noncoding (224/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,051,262 | A→C | 7.6% | noncoding (227/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,121,959 | T→G | 8.2% | N110T (AAC→ACC) | hslV ← | peptidase component of the HslUV protease |
| RA | 4,179,562 | C→T | 5.6% | G228G (GGC→GGT) | rplA → | 50S ribosomal subunit protein L1 |
| RA | 4,189,448 | C→T | 57.3% | Q1367* (CAG→TAG) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,189,605 | T→C | 5.1% | intergenic (+32/‑181) | rpoC → / → yjaZ | RNA polymerase, beta prime subunit/stationary phase growth adaptation protein |
| RA | 4,189,606 | T→G | 5.0% | intergenic (+33/‑180) | rpoC → / → yjaZ | RNA polymerase, beta prime subunit/stationary phase growth adaptation protein |
| RA | 4,189,607 | C→A | 6.0% | intergenic (+34/‑179) | rpoC → / → yjaZ | RNA polymerase, beta prime subunit/stationary phase growth adaptation protein |
| RA | 4,189,608 | G→A | 5.3% | intergenic (+35/‑178) | rpoC → / → yjaZ | RNA polymerase, beta prime subunit/stationary phase growth adaptation protein |
| RA | 4,249,431 | T→A | 5.9% | intergenic (+120/‑123) | lamB → / → malM | maltose outer membrane porin (maltoporin)/maltose regulon periplasmic protein |
| RA | 4,291,513 | T→C | 6.4% | M1A (GTG→GCG) † | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,296,060 | C→T | 54.6% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,297,884 | A→G | 6.1% | Y495H (TAC→CAC) | fdhF ← | formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,325,948 | A→G | 6.6% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,353,171 | C→G | 5.2% | intergenic (+90/+29) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,172 | C→G | 5.2% | intergenic (+91/+28) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,173 | T→C | 5.2% | intergenic (+92/+27) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,362,578 | G→T | 50.4% | noncoding (49/76 nt) | pheU ← | tRNA‑Phe |
| RA | 4,365,452 | G→T | 8.8% | intergenic (‑96/+20) | cutA ← / ← dcuA | divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter |
| RA | 4,365,453 | A→C | 9.3% | intergenic (‑97/+19) | cutA ← / ← dcuA | divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter |
| RA | 4,366,854 | T→G | 7.9% | intergenic (‑81/+37) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,366,855 | C→A | 7.5% | intergenic (‑82/+36) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,400,138 | A→C | 7.4% | D296A (GAC→GCC) | miaA → | delta(2)‑isopentenylpyrophosphate tRNA‑adenosine transferase |
| RA | 4,406,129 | T→C | 100% | intergenic (+144/‑61) | purA → / → nsrR | adenylosuccinate synthetase/nitric oxide‑sensitive repressor for NO regulon |
| RA | 4,414,243 | A→T | 5.1% | intergenic (+52/‑32) | yjfC → / → aidB | ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,414,249 | G→C | 5.1% | intergenic (+58/‑26) | yjfC → / → aidB | ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,457,256 | T→G | 5.3% | intergenic (+98/+58) | mpl → / ← yjgA | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase/ribosome‑associated UPF0307 family protein |
| RA | 4,484,461 | A→C | 7.8% | A497A (GCT→GCG) | pepA ← | multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor |
| RA | 4,564,315 | G→A | 6.2% | G125G (GGC→GGT) | yjiL ← | putative ATPase, activator of (R)‑hydroxyglutaryl‑CoA dehydratase |
| RA | 4,606,118 | G→A | 14.6% | noncoding (48/87 nt) | leuV ← | tRNA‑Leu |
| JC JC | 4,640,551 | IS1 (–) +9 bp | 100% | intergenic (+9/‑383) | yjjY → / → yjtD | uncharacterized protein/putative methyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 772987 | 774199 | 1213 | 26 [25] | [25] 26 | [cydA]–[cydX] | [cydA],cydB,[cydX] |
| * | * | ÷ | NC_000913 | 1037679 | 1039317 | 1639 | 26 [25] | [24] 26 | cbdA–[cbdB] | cbdA,[cbdB] |
| * | * | ÷ | NC_000913 | 1166059 | 1167414 | 1356 | 27 [25] | [25] 26 | ndh | ndh |
| * | * | ÷ | NC_000913 | 3423744–3424234 | 3424578–3424239 | 6–835 | 27 [25] | [25] 26 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 16653 | NA (NA) | 4 (0.060) | 4/262 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | 272886 = | 73 (1.070) | 4 (0.060) | 4/266 | NT | 5.1% | pseudogene (40/1108 nt) | ykfC | CP4‑6 prophage; conserved protein;Phage or Prophage Related |
| ? | NC_000913 | 272926 = | 79 (1.200) | pseudogene (80/1108 nt) | ykfC | CP4‑6 prophage; conserved protein;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 5 (0.080) | 3/262 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274384 = | NA (NA) | 4 (0.060) | 3/270 | NT | NA | noncoding (766/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274422 = | NA (NA) | noncoding (728/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 305090 | 50 (0.730) | 3 (0.050) | 3/268 | NT | 5.8% | coding (116/711 nt) | ecpE | ECP production pilus chaperone |
| ? | NC_000913 | = 305117 | 49 (0.740) | coding (89/711 nt) | ecpE | ECP production pilus chaperone | |||||
| * | ? | NC_000913 | 354606 = | NA (NA) | 4 (0.060) | 4/262 | NT | 5.0% | noncoding (8/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 354654 = | 76 (1.170) | noncoding (56/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 6 (0.090) | 6/262 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 677263 | 83 (1.210) | 5 (0.080) | 5/262 | NT | 5.8% | coding (553/708 nt) | ybeR | uncharacterized protein |
| ? | NC_000913 | = 677272 | 83 (1.280) | coding (562/708 nt) | ybeR | uncharacterized protein | |||||
| * | ? | NC_000913 | 781369 = | 43 (0.630) | 15 (0.220) +GAG |
6/270 | NT | 35.0% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 14 (0.200) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | = 1201867 | 66 (0.960) | 4 (0.060) | 3/266 | NT | 5.7% | coding (218/309 nt) | ymfJ | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1201905 | 69 (1.050) | coding (180/309 nt) | ymfJ | e14 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 1207790 = | 14 (0.200) | 24 (0.400) | 23/244 | NT | 53.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 30 (0.500) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 15 (0.220) | 22 (0.360) | 16/244 | NT | 50.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 30 (0.500) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 70 (1.050) | 63/268 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1387868 | 44 (0.640) | 4 (0.060) | 4/270 | NT | 8.4% | coding (1149/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
| ? | NC_000913 | = 1387892 | 44 (0.660) | coding (1173/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase | |||||
| * | ? | NC_000913 | 1654352 = | 59 (0.860) | 3 (0.050) | 3/264 | NT | 5.2% | coding (790/1215 nt) | rspA | bifunctional D‑altronate/D‑mannonate dehydratase |
| ? | NC_000913 | 1654370 = | 52 (0.790) | coding (772/1215 nt) | rspA | bifunctional D‑altronate/D‑mannonate dehydratase | |||||
| * | ? | NC_000913 | 2278525 = | 67 (0.980) | 4 (0.060) | 4/268 | NT | 6.0% | intergenic (‑288/+45) | yejG/bcr | uncharacterized protein/bicyclomycin/cysteine/sulfonamide efflux transporter |
| ? | NC_000913 | 2278565 = | 61 (0.920) | intergenic (‑328/+5) | yejG/bcr | uncharacterized protein/bicyclomycin/cysteine/sulfonamide efflux transporter | |||||
| * | ? | NC_000913 | = 2953091 | 66 (0.960) | 6 (0.090) | 5/264 | NT | 8.6% | coding (2913/3543 nt) | recB | exonuclease V (RecBCD complex), beta subunit |
| ? | NC_000913 | = 2953105 | 65 (0.990) | coding (2899/3543 nt) | recB | exonuclease V (RecBCD complex), beta subunit | |||||
| * | ? | NC_000913 | 3423318 = | 97 (1.420) | 5 (0.080) | 4/258 | NT | 5.4% | intergenic (+124/+105) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423341 = | 84 (1.310) | intergenic (+147/+82) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | 3473464 = | 70 (1.020) | 4 (0.060) | 4/266 | NT | 5.5% | coding (51/2115 nt) | fusA | protein chain elongation factor EF‑G, GTP‑binding |
| ? | NC_000913 | 3473495 = | 71 (1.080) | coding (20/2115 nt) | fusA | protein chain elongation factor EF‑G, GTP‑binding | |||||
| * | ? | NC_000913 | 3591746 = | 74 (1.080) | 4 (0.060) | 3/268 | NT | 5.5% | coding (580/1317 nt) | ugpB | sn‑glycerol‑3‑phosphate ABC transporter periplasmic binding protein |
| ? | NC_000913 | 3591824 = | 66 (0.990) | coding (502/1317 nt) | ugpB | sn‑glycerol‑3‑phosphate ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 3620122 | NA (NA) | 3 (0.040) +GG |
3/272 | NT | 100% | coding (931/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620144 | 0 (0.000) | coding (953/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3620220 | NA (NA) | 3 (0.050) | 3/264 | NT | 100% | coding (1029/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620255 | 0 (0.000) | coding (1064/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 4184513 = | 68 (0.990) | 4 (0.060) | 3/256 | NT | 6.0% | coding (3269/4029 nt) | rpoB | RNA polymerase, beta subunit |
| ? | NC_000913 | 4184558 = | 62 (0.980) | coding (3314/4029 nt) | rpoB | RNA polymerase, beta subunit | |||||
| * | ? | NC_000913 | 4246038 = | 54 (0.790) | 3 (0.050) | 3/264 | NT | 5.7% | coding (382/1191 nt) | malE | maltose transporter subunit |
| ? | NC_000913 | 4246058 = | 47 (0.720) | coding (362/1191 nt) | malE | maltose transporter subunit | |||||
| * | ? | NC_000913 | 4390982 = | 64 (0.930) | 4 (0.060) | 3/266 | NT | 6.3% | coding (528/1053 nt) | rsgA | ribosome small subunit‑dependent GTPase A |
| ? | NC_000913 | 4391021 = | 58 (0.880) | coding (489/1053 nt) | rsgA | ribosome small subunit‑dependent GTPase A | |||||
| * | ? | NC_000913 | 4636324 = | 51 (0.740) | 4 (0.060) | 3/262 | NT | 7.4% | coding (318/690 nt) | creB | response regulator in two‑component regulatory system with CreC |
| ? | NC_000913 | 4636375 = | 52 (0.800) | coding (369/690 nt) | creB | response regulator in two‑component regulatory system with CreC | |||||
| * | ? | NC_000913 | = 4636330 | 54 (0.790) | 3 (0.050) | 3/262 | NT | 5.5% | coding (324/690 nt) | creB | response regulator in two‑component regulatory system with CreC |
| ? | NC_000913 | = 4636367 | 52 (0.800) | coding (361/690 nt) | creB | response regulator in two‑component regulatory system with CreC | |||||