mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,044,619 | 0 | G | T | 20.6% | 62.2 / 11.8 | 34 | intergenic (‑494/‑88) | yihA/yihI | cell division GTP‑binding protein/activator of Der GTPase |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1203246 = | 27 (0.660) | 8 (0.220) | 8/258 | 3.3 | 24.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 25 (0.690) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 25 (0.610) | 6 (0.170) | 6/258 | 4.1 | 20.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 25 (0.690) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 3338351 = | 55 (1.350) | 4 (0.110) | 4/270 | 5.2 | 7.8% | coding (276/1434 nt) | rpoN | RNA polymerase, sigma 54 (sigma N) factor |
| ? | CP009273 | 3338383 = | 44 (1.160) | coding (308/1434 nt) | rpoN | RNA polymerase, sigma 54 (sigma N) factor | |||||
| * | ? | CP009273 | = 4470776 | NA (NA) | 3 (0.090) | 3/242 | 5.3 | NA | intergenic (+33/+23) | yjgN/valS | DUF898 family inner membrane protein/valyl‑tRNA synthetase |
| ? | CP009273 | = 4470752 | NA (NA) | intergenic (+9/+47) | yjgN/valS | DUF898 family inner membrane protein/valyl‑tRNA synthetase | |||||
| * | ? | CP009273 | = 4034046 | 41 (1.000) | 5 (0.120) | 4/286 | 5.4 | 10.8% | intergenic (+50/+220) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | CP009273 | = 4203087 | 42 (1.040) | noncoding (120/120 nt) | rrfE | 5S ribosomal RNA of rrnE operon | |||||
| * | ? | CP009273 | 1884990 = | 38 (0.930) | 4 (0.100) | 4/284 | 5.4 | 9.3% | coding (535/696 nt) | tsaB | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD |
| ? | CP009273 | 1885016 = | 41 (1.030) | coding (509/696 nt) | tsaB | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD | |||||
| * | ? | CP009273 | 4098499 = | NA (NA) | 3 (0.080) | 3/276 | 5.8 | NA | noncoding (1/98 nt) | RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 4098524 = | NA (NA) | noncoding (26/98 nt) | RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 1681349 = | 34 (0.830) | 3 (0.080) | 3/278 | 5.9 | 8.5% | coding (1286/1647 nt) | fumA | fumarate hydratase (fumarase A), aerobic Class I |
| ? | CP009273 | 1681367 = | 32 (0.820) | coding (1268/1647 nt) | fumA | fumarate hydratase (fumarase A), aerobic Class I | |||||
| * | ? | CP009273 | = 1422521 | NA (NA) | 14 (0.360) | 3/278 | 5.9 | 100% | noncoding (531/1196 nt) | IS5 | repeat region |
| ? | CP009273 | = 2060347 | 0 (0.000) | noncoding (488/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 3940181 | 7 (0.170) | 5 (0.120) | 3/286 | 6.0 | 17.3% | intergenic (+2/‑51) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | CP009273 | = 4034044 | 41 (1.020) | intergenic (+48/+222) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||