mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 26 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB143 | 1,277,828 | 0 | T | G | 55.6% | 1.2 / 10.5 | 19 | intergenic (+20/‑70) | pal_2/ompA_1 | Peptidoglycan‑associated lipoprotein/Outer membrane protein A |
| * | ACB143 | 3,063,553 | 0 | C | G | 53.8% | 5.1 / 16.0 | 13 | intergenic (+81/‑273) | adh_2/pqqD_2 | Aldehyde dehydrogenase/PqqA binding protein |
| * | ACB143 | 2,094,808 | 0 | A | C | 51.2% | ‑4.0 / 14.5 | 43 | L186R (CTG→CGG) | CJ019_01995 | hypothetical protein |
| * | ACB143 | 5,383,758 | 0 | C | G | 50.0% | 22.7 / 15.8 | 27 | intergenic (+528/‑330) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | ACB143 | 675,124 | 0 | T | G | 46.7% | 14.2 / 12.0 | 30 | Q400P (CAG→CCG) | mcpH_2 | Methyl‑accepting chemotaxis protein McpH |
| * | ACB143 | 1,175,552 | 0 | A | C | 46.0% | 21.0 / 13.8 | 37 | N49T (AAC→ACC) | tadA | tRNA‑specific adenosine deaminase |
| * | ACB143 | 6,067,354 | 0 | A | C | 46.0% | 36.0 / 11.1 | 37 | V162G (GTG→GGG) | cheB_5 | Protein‑glutamatemethylesterase/protein‑glutamin e glutaminase |
| * | ACB143 | 188,021 | 0 | G | C | 44.4% | 19.0 / 14.1 | 36 | E960D (GAG→GAC) | CJ019_00185 | hypothetical protein |
| * | ACB143 | 2,730,149 | 0 | T | G | 41.5% | 27.3 / 13.2 | 41 | V1336G (GTG→GGG) | CJ019_02576 | hypothetical protein |
| * | ACB143 | 3,138,350 | 0 | T | G | 40.0% | 36.2 / 16.0 | 40 | F240V (TTT→GTT) | rbsC_2 | Ribose import permease protein RbsC |
| * | ACB143 | 3,984,544 | 0 | G | C | 40.0% | 30.3 / 11.0 | 30 | G237G (GGC→GGG) | CJ019_03762 | hypothetical protein |
| * | ACB143 | 2,076,865 | 0 | T | G | 38.6% | 60.8 / 10.4 | 57 | G154G (GGT→GGG) | CJ019_01978 | hypothetical protein |
| * | ACB143 | 3,973,777 | 0 | A | C | 36.5% | 61.3 / 13.9 | 53 | L161R (CTG→CGG) | cobN | Aerobic cobaltochelatase subunit CobN |
| * | ACB143 | 4,028,451 | 0 | T | A | 36.1% | 41.6 / 13.4 | 36 | intergenic (‑120/‑127) | CJ019_03802/mcpU_3 | hypothetical protein/Methyl‑accepting chemotaxis protein McpU |
| * | ACB143 | 2,171,271 | 0 | G | C | 35.6% | 78.5 / 15.4 | 55 | V150V (GTG→GTC) | CJ019_02060 | IS1182 family transposase ISPpu16 |
| * | ACB143 | 4,866,379 | 0 | T | G | 34.0% | 82.2 / 12.3 | 50 | N188T (AAC→ACC) | aqpZ | Aquaporin Z |
| * | ACB143 | 4,028,455 | 0 | G | C | 33.3% | 40.8 / 14.0 | 36 | intergenic (‑124/‑123) | CJ019_03802/mcpU_3 | hypothetical protein/Methyl‑accepting chemotaxis protein McpU |
| * | ACB143 | 4,277,029 | 0 | C | G | 32.7% | 91.6 / 15.3 | 56 | F279L (TTC→TTG) | hbd | 3‑hydroxybutyryl‑CoA dehydrogenase |
| * | ACB143 | 5,096,415 | 0 | C | G | 32.6% | 58.6 / 10.6 | 47 | intergenic (+28/‑162) | CJ019_04792/CJ019_04793 | Putative pterin‑4‑alpha‑carbinolaminedehydratase/hypothetical protein |
| * | ACB143 | 6,043,196 | 0 | C | A | 31.1% | 84.2 / 19.4 | 61 | A37S (GCC→TCC) | puuD_3 | Gamma‑glutamyl‑gamma‑aminobutyrate hydrolasePuuD |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | 3402968 = | 65 (1.140) | 11 (0.200) | 9/252 | 3.6 | 13.5% | coding (364/378 nt) | CJ019_03221 | hypothetical protein |
| ? | ACB143 | = 3443751 | 78 (1.420) | intergenic (‑131/+258) | CJ019_03269/CJ019_03270 | hypothetical protein/hypothetical protein | |||||