mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 31 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB143 | 3,626,071 | 0 | T | G | 56.5% | ‑3.3 / 11.5 | 24 | V168G (GTC→GGC) | hcf136_3 | Ycf48‑like protein |
| * | ACB143 | 5,251,184 | 0 | C | A | 56.2% | 7.8 / 16.1 | 16 | intergenic (‑64/+80) | CJ019_04948/fabV | hypothetical protein/Enoyl‑[acyl‑carrier‑protein] reductase [NADH] |
| * | ACB143 | 3,626,089 | 0 | T | G | 56.0% | ‑1.5 / 13.2 | 25 | V174G (GTG→GGG) | hcf136_3 | Ycf48‑like protein |
| * | ACB143 | 2,043,578 | 0 | A | C | 55.6% | 3.0 / 13.8 | 19 | intergenic (‑14/+161) | smrA/CJ019_01939 | putative DNA endonuclease SmrA/hypothetical protein |
| * | ACB143 | 3,440,326 | 0 | A | C | 53.1% | ‑5.8 / 12.3 | 32 | S18R (AGC→CGC) | CJ019_03266 | hypothetical protein |
| * | ACB143 | 2,094,808 | 0 | A | C | 51.3% | ‑1.4 / 18.1 | 43 | L186R (CTG→CGG) | CJ019_01995 | hypothetical protein |
| * | ACB143 | 5,693,175 | 0 | A | C | 45.1% | 13.1 / 15.3 | 54 | S236R (AGC→CGC) | pyrC' | Dihydroorotase‑like protein |
| * | ACB143 | 2,641,826 | 0 | A | C | 41.2% | 53.4 / 17.7 | 51 | Q36P (CAG→CCG) | CJ019_02499 | hypothetical protein |
| * | ACB143 | 2,066,445 | 0 | C | G | 40.5% | 52.4 / 10.5 | 42 | R7P (CGC→CCC) | fatA_1 | Ferric‑anguibactin receptor FatA |
| * | ACB143 | 4,135,590 | 0 | A | C | 40.4% | 22.0 / 10.9 | 52 | Q32P (CAG→CCG) | tgnC | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| * | ACB143 | 3,138,357 | 0 | C | G | 38.9% | 43.1 / 10.1 | 38 | S242W (TCG→TGG) | rbsC_2 | Ribose import permease protein RbsC |
| * | ACB143 | 4,425,060 | 0 | C | A | 38.2% | 28.4 / 16.7 | 34 | intergenic (‑19/‑99) | CJ019_04200/CJ019_04201 | hypothetical protein/hypothetical protein |
| * | ACB143 | 4,423,083 | 0 | T | G | 38.0% | 48.4 / 10.6 | 50 | V51G (GTG→GGG) | fabG_6 | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase FabG |
| * | ACB143 | 2,076,865 | 0 | T | G | 37.9% | 67.2 / 10.5 | 66 | G154G (GGT→GGG) | CJ019_01978 | hypothetical protein |
| * | ACB143 | 5,978,600 | 0 | T | A | 37.8% | 44.5 / 10.9 | 55 | L684Q (CTG→CAG) | sasA_19 | Adaptive‑response sensory‑kinase SasA |
| * | ACB143 | 4,425,070 | 0 | G | C | 37.5% | 37.0 / 20.1 | 32 | intergenic (‑29/‑89) | CJ019_04200/CJ019_04201 | hypothetical protein/hypothetical protein |
| * | ACB143 | 3,737,443 | 0 | T | C | 36.6% | 49.3 / 19.6 | 41 | I229I (ATT→ATC) | paoB | Aldehyde oxidoreductase FAD‑binding subunitPaoB |
| * | ACB143 | 1,770,577 | 0 | A | C | 35.6% | 98.8 / 13.9 | 59 | intergenic (+255/+37) | CJ019_01684/higA‑1 | hypothetical protein/Antitoxin HigA‑1 |
| * | ACB143 | 1,537,415 | 0 | C | G | 34.8% | 25.6 / 14.4 | 25 | A388G (GCG→GGG) | mdfA | Multidrug transporter MdfA |
| * | ACB143 | 3,138,350 | 0 | T | G | 34.1% | 44.4 / 10.3 | 44 | F240V (TTT→GTT) | rbsC_2 | Ribose import permease protein RbsC |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | = 2830115 | 9 (0.140) | 3 (0.050) | 3/238 | 6.7 | 28.3% | intergenic (‑27/+156) | gabD1/namA_3 | Succinate‑semialdehyde dehydrogenase [NADP( )]1/NADPH dehydrogenase |
| ? | ACB143 | 2830212 = | 7 (0.120) | intergenic (‑124/+59) | gabD1/namA_3 | Succinate‑semialdehyde dehydrogenase [NADP( )]1/NADPH dehydrogenase | |||||