mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 23 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB143 | 2,088,271 | 0 | A | C | 60.0% | 2.3 / 14.7 | 15 | intergenic (‑265/+52) | htpX/alaA | Protease HtpX/Glutamate‑pyruvate aminotransferase AlaA |
| * | ACB143 | 1,537,450 | 0 | T | G | 57.1% | 1.3 / 10.3 | 14 | W400G (TGG→GGG) | mdfA | Multidrug transporter MdfA |
| * | ACB143 | 2,088,274 | 0 | A | C | 53.3% | 3.9 / 16.1 | 15 | intergenic (‑268/+49) | htpX/alaA | Protease HtpX/Glutamate‑pyruvate aminotransferase AlaA |
| * | ACB143 | 1,721,878 | 0 | A | C | 45.0% | 18.8 / 14.0 | 40 | G95G (GGT→GGG) | CJ019_01617 | hypothetical protein |
| * | ACB143 | 2,094,817 | 0 | T | G | 44.1% | 22.0 / 13.8 | 64 | Q183P (CAG→CCG) | CJ019_01995 | hypothetical protein |
| * | ACB143 | 5,689,172 | 0 | A | C | 42.5% | 44.9 / 10.7 | 40 | P118P (CCA→CCC) | CJ019_05336 | hypothetical protein |
| * | ACB143 | 2,094,808 | 0 | A | C | 38.7% | 30.0 / 11.6 | 63 | L186R (CTG→CGG) | CJ019_01995 | hypothetical protein |
| * | ACB143 | 4,425,070 | 0 | G | C | 36.7% | 28.0 / 17.4 | 30 | intergenic (‑29/‑89) | CJ019_04200/CJ019_04201 | hypothetical protein/hypothetical protein |
| * | ACB143 | 5,383,758 | 0 | C | G | 35.3% | 46.0 / 10.2 | 34 | intergenic (+528/‑330) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | ACB143 | 3,273,878 | 0 | C | A | 30.9% | 60.4 / 11.1 | 42 | D40E (GAC→GAA) | fabG_5 | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase FabG |
| * | ACB143 | 4,028,451 | 0 | T | A | 30.9% | 63.3 / 14.4 | 42 | intergenic (‑120/‑127) | CJ019_03802/mcpU_3 | hypothetical protein/Methyl‑accepting chemotaxis protein McpU |
| * | ACB143 | 2,308,319 | 0 | C | G | 29.9% | 121.2 / 19.4 | 77 | A225P (GCA→CCA) | fucA | L‑fuculose phosphate aldolase |
| * | ACB143 | 1,721,875 | 0 | G | C | 28.9% | 74.1 / 12.0 | 45 | G96G (GGC→GGG) | CJ019_01617 | hypothetical protein |
| * | ACB143 | 2,113,895 | 0 | T | G | 26.9% | 107.3 / 15.1 | 67 | R663R (CGT→CGG) | CJ019_02007 | hypothetical protein |
| * | ACB143 | 2,113,897 | 0 | C | G | 26.2% | 131.6 / 12.5 | 66 | S664* (TCA→TGA) | CJ019_02007 | hypothetical protein |
| * | ACB143 | 6,043,196 | 0 | C | A | 25.6% | 116.3 / 17.7 | 78 | A37S (GCC→TCC) | puuD_3 | Gamma‑glutamyl‑gamma‑aminobutyrate hydrolasePuuD |
| * | ACB143 | 2,348,251 | 0 | A | C | 25.4% | 142.3 / 12.7 | 72 | V266G (GTG→GGG) | oprJ_1 | Outer membrane protein OprJ |
| * | ACB143 | 3,047,193 | 0 | C | G | 23.9% | 126.6 / 13.1 | 67 | A125P (GCC→CCC) | CJ019_02862 | hypothetical protein |
| * | ACB143 | 3,413,573 | 0 | G | C | 22.6% | 103.0 / 11.1 | 53 | intergenic (‑439/‑591) | lexA_2/CJ019_03236 | LexA repressor/hypothetical protein |
| * | ACB143 | 2,127,629 | 0 | C | G | 21.5% | 170.3 / 12.8 | 83 | E727Q (GAA→CAA) | fadE | Acyl‑coenzyme A dehydrogenase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | = 2152216 | 117 (2.050) | 3 (0.050) | 3/256 | 6.5 | 2.5% | coding (141/1245 nt) | fabF_1 | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase 2 |
| ? | ACB143 | 2152220 = | 115 (2.040) | coding (145/1245 nt) | fabF_1 | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase 2 | |||||
| * | ? | ACB143 | = 4912470 | 35 (0.610) | 3 (0.050) | 3/260 | 6.6 | 5.9% | coding (1553/1557 nt) | CJ019_04608 | hypothetical protein |
| ? | ACB143 | 4981650 = | 61 (1.070) | intergenic (+1/+93) | ycgR/ycaD_3 | Flagellar brake protein YcgR/putative MFS‑type transporter YcaD | |||||